Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_M07
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 212 3e-55
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 200 8e-52
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 115 3e-26
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 95 5e-20
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.031
AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical ... 30 2.0
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 8.1
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 212 bits (517), Expect = 3e-55
Identities = 98/184 (53%), Positives = 128/184 (69%)
Frame = +3
Query: 195 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 374
LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 375 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKK 554
+A+ FK+L+KYRPE+ RPNT+R G NT+T+LVE +
Sbjct: 92 SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETR 151
Query: 555 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLXLTNVESG 734
+AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT + L +V
Sbjct: 152 RAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPE 211
Query: 735 DRAS 746
D+++
Sbjct: 212 DKSA 215
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 200 bits (488), Expect = 8e-52
Identities = 98/184 (53%), Positives = 128/184 (69%)
Frame = +3
Query: 195 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 374
LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 375 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKK 554
+A+ FK+L+KYRPE+ RPNT+R G NT+T+LVE +
Sbjct: 92 SARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLVETR 131
Query: 555 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLXLTNVESG 734
+AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT + L +V
Sbjct: 132 RAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPE 191
Query: 735 DRAS 746
D+++
Sbjct: 192 DKSA 195
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 115 bits (277), Expect = 3e-26
Identities = 50/76 (65%), Positives = 63/76 (82%)
Frame = +3
Query: 195 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 374
LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194
Query: 375 TAKGLFKILEKYRPET 422
+A+ FK+L+KYRPE+
Sbjct: 195 SARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 95.1 bits (226), Expect = 5e-20
Identities = 41/58 (70%), Positives = 49/58 (84%)
Frame = +3
Query: 195 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
LFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.0 bits (124), Expect = 1e-07
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +3
Query: 510 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 677
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 507 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-AL 683
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG A+
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 684 VHRK 695
HR+
Sbjct: 128 GHRR 131
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -3
Query: 464 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 345
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>AF003386-7|AAB54258.2| 412|Caenorhabditis elegans Hypothetical
protein F59E12.8 protein.
Length = 412
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +3
Query: 3 FLFRPFSPKVWSPLSVTSLFVA 68
FLF PFS VW LS+T L VA
Sbjct: 54 FLFHPFSTTVWLLLSLTVLVVA 75
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 337 LRSTNLPRHWTRLQLRA 387
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,053,334
Number of Sequences: 27780
Number of extensions: 313750
Number of successful extensions: 881
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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