Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_M04
(633 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 63 2e-12
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 62 5e-12
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 61 9e-12
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 59 3e-11
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 59 3e-11
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 45 6e-07
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 26 0.23
AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein pr... 25 0.40
AY531876-2|AAT08871.1| 340|Tribolium castaneum tyrosine recombi... 24 1.2
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 22 4.9
DQ211693-1|ABB16909.1| 314|Tribolium castaneum dorsocross protein. 21 6.5
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 63.3 bits (147), Expect = 2e-12
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Frame = +3
Query: 225 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA- 398
++ E + A L + W D L WN E+G L ++ +LW+PDV++ N+A
Sbjct: 42 DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101
Query: 399 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 578
G + V +NGS ++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 102 GTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 61.7 bits (143), Expect = 5e-12
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Frame = +3
Query: 225 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA- 398
++ E + A L + W D L WN E+G L ++ +LW+PDV++ N+A
Sbjct: 42 DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101
Query: 399 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 578
G + V +NGS ++ + + + +P D Q C KFGS ++ +++D V++
Sbjct: 102 GTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 60.9 bits (141), Expect = 9e-12
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +3
Query: 225 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA- 398
++ E + A L + W D L WN E+G L ++ +LW+PDV++ N+A
Sbjct: 42 DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101
Query: 399 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 578
G + V + GS ++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 102 GTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 58.8 bits (136), Expect = 3e-11
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +3
Query: 267 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 440
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 441 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 578
++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 58.8 bits (136), Expect = 3e-11
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +3
Query: 267 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 440
L + W D L WN E+G L ++ +LW+PDV++ N+A G + V + GS
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115
Query: 441 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 578
++ + M + +P D Q C KFGS ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 44.8 bits (101), Expect = 6e-07
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Frame = +3
Query: 123 SLSLMIDSLLATYDRDSPPD---SKIVVNLTLH-LRHANIRESESTVRIQADLQMNWIDK 290
++S ++DS +YD+ P+ + V +T++ L +++ E + + + W D
Sbjct: 40 NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99
Query: 291 RLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSV 443
RL++ G T V SE +W PD +N ATT+ ++ RV ++GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155
Query: 444 SWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 539
+ RL I+ M L P D Q C + S
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLCHIEIES 187
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 26.2 bits (55), Expect = 0.23
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 408 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 509
A+ + N + SW + ++ + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305
>AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein
protein.
Length = 203
Score = 25.4 bits (53), Expect = 0.40
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = -3
Query: 247 VDSDSRMLACLKCRVRLTTILESGGESRSYVARSESIMRDSDVAFSHSAALAIAQVRRNG 68
V S+S CR I + ++ V+ + +DS AF+ +AQV
Sbjct: 56 VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115
Query: 67 NKNNISRRHFMTT 29
N N + R TT
Sbjct: 116 NGTNKNMRRLSTT 128
>AY531876-2|AAT08871.1| 340|Tribolium castaneum tyrosine
recombinase protein.
Length = 340
Score = 23.8 bits (49), Expect = 1.2
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -3
Query: 229 MLACLKCRVRLTTILESGGESRSYVARSESIMRDSDVAFSHSAALAIAQ 83
+++ L C + T +L S GE+R ++ + S + S + +A+
Sbjct: 228 VVSTLSCYLERTELLRSSGETRLFLTHRKPFHPASTQSLSRWIKMVLAE 276
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 21.8 bits (44), Expect = 4.9
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -2
Query: 455 LYPG-DGAVIRYTGAESVVPGGGC 387
LY G DG+VI E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371
>DQ211693-1|ABB16909.1| 314|Tribolium castaneum dorsocross protein.
Length = 314
Score = 21.4 bits (43), Expect = 6.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 307 QGSGAAALGWCPRN 348
+ S A ALGW P N
Sbjct: 153 KASTAQALGWAPTN 166
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,028
Number of Sequences: 336
Number of extensions: 3407
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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