Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_M01
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1038 - 29879965-29880492                                         58   5e-09
07_03_1338 - 25877235-25877738                                         58   8e-09
05_07_0049 - 27327804-27328400                                         56   3e-08
02_01_0745 - 5550472-5551053                                           55   6e-08
05_07_0157 - 28079181-28079720                                         46   4e-05
05_01_0488 - 4070506-4072277,4072455-4072557                           30   1.9  

>03_05_1038 - 29879965-29880492
          Length = 175

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
 Frame = +1

Query: 193 SPKIEKIVFEITNLNLLEVSELSQVLKKRLN---LPDXXXXXXXXXXXXXXXXXXXXXXX 363
           +P++  +V EI  L L+E S L+  L+ RL    LP                        
Sbjct: 38  TPRVSALVDEICGLTLIEASSLTDALRGRLGVDQLPPLAILTGGAAPLAGGGAATGAAGE 97

Query: 364 XXXXXT---SFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKD 534
                    +F VK+  FD   K+ +IKE++       L +AK+ VE  P V+KA + K+
Sbjct: 98  EAKAKEEKMAFDVKLEGFDAAAKLKIIKELRAFTN-LGLKEAKELVEKAPAVLKAGVPKE 156

Query: 535 EAEKLKEALTKVGAIIEIE 591
           EAE + E +  +GA I +E
Sbjct: 157 EAESIAEKMRAIGAKIVLE 175


>07_03_1338 - 25877235-25877738
          Length = 167

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
 Frame = +1

Query: 196 PKIEKIVFEITNLNLLEVSELSQVLKKRLNLP---DXXXXXXXXXXXXXXXXXXXXXXXX 366
           PK+ +I  ++  L+  E+ + S +L+ +L L                             
Sbjct: 34  PKLSRIADQLLELSPAELDDYSALLRLKLRLSLTSSAASGAAATGAAGDAASGSAGAEEA 93

Query: 367 XXXXTSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEK 546
               TSF VK+ K++   K+ +IKEV+ + +   L +AK+ VE  P VV++ + K+EAE 
Sbjct: 94  AAVKTSFDVKIEKYEAAAKIKIIKEVRAVTD-LGLKEAKELVEKAPVVVRSGLPKEEAEA 152

Query: 547 LKEALTKVGAIIEIE 591
           L   L   GA + +E
Sbjct: 153 LAAKLKAAGAAVALE 167


>05_07_0049 - 27327804-27328400
          Length = 198

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 12/193 (6%)
 Frame = +1

Query: 49  RNMNGIRIIKNVNLQWRSLSRCSVLRQ-EVTQTVTPL---TIPVPEGVXKPVSPKIEKIV 216
           R+ + +R++++ +L W S S  +     +V +  T     T         P S ++ ++V
Sbjct: 7   RSGHRLRLLRHGSLSWASFSAAAAEELIDVRKLPTDYDASTFDPTAPSRPPPSDRVWRLV 66

Query: 217 FEITNLNLLEVSELSQVLKKRLNLP--------DXXXXXXXXXXXXXXXXXXXXXXXXXX 372
            ++++L L E + LS +L +RL++P                                   
Sbjct: 67  EDVSSLTLAESAALSALLLRRLDVPAPPIAILNSAAGLGGGGGAGAAGAAGEKAGGAAAA 126

Query: 373 XXTSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLK 552
             T F +++  FD   K+ +IKE++   +   L +AK+ VE  P V+K  +SK+EA  + 
Sbjct: 127 EKTVFELRLEAFDAASKIKVIKEIRSFTD-LGLKEAKELVEKAPAVIKGGVSKEEARTII 185

Query: 553 EALTKVGAIIEIE 591
           + +  VGA + ++
Sbjct: 186 DKMKAVGAKVVMD 198


>02_01_0745 - 5550472-5551053
          Length = 193

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
 Frame = +1

Query: 169 PEGVXKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXX 348
           P G   P S K+  +   I  L   E+ +++  L  RLN P                   
Sbjct: 50  PYGPMSPPSQKVVDLADRIAALPPEEIKQIAPALLLRLNQPPPQAISGQGFSFSPQGGGG 109

Query: 349 XXXXXXXXXX----TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVK 516
                         T F VK+ KFD   K+ +IKE++   +   L +AK+ VE  P ++K
Sbjct: 110 AAGAAKAEEKKAEKTVFDVKLEKFDAAAKIKIIKEIRTFTD-LGLKEAKELVEKAPVILK 168

Query: 517 ADISKDEAEKLKEALTKVGAIIEIE 591
             ++K+EAE + E +   G +  +E
Sbjct: 169 QSLTKEEAEAIIEKIKVAGGVAVME 193


>05_07_0157 - 28079181-28079720
          Length = 179

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 25/70 (35%), Positives = 39/70 (55%)
 Frame = +1

Query: 379 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 558
           T F V + +     ++A IK V+ L     L +AK  +E +P   K  +SK+EAE+ K+ 
Sbjct: 110 TEFDVVIEEVPSSARIATIKVVRALTN-LALKEAKDLIEGLPKKAKEAVSKEEAEEAKKQ 168

Query: 559 LTKVGAIIEI 588
           L +VGA + I
Sbjct: 169 LEEVGAKVSI 178


>05_01_0488 - 4070506-4072277,4072455-4072557
          Length = 624

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/66 (27%), Positives = 41/66 (62%)
 Frame = +1

Query: 394 KMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEALTKVG 573
           ++++ ++KQ+V+ + E   L +  + V+++K  E++  VV   ++KDE ++LKE++    
Sbjct: 215 ELSEHEEKQQVSDV-ETSSLQKDLDEVKSEK--EALEAVVL--VNKDEIDRLKESMVSAA 269

Query: 574 AIIEIE 591
              E+E
Sbjct: 270 KQFEVE 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,981,102
Number of Sequences: 37544
Number of extensions: 213118
Number of successful extensions: 558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)