Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_M01
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40517| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   1e-22
SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)            64   1e-10
SB_8847| Best HMM Match : RVT_1 (HMM E-Value=5.5)                      28   7.9  
SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_40517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score =  103 bits (247), Expect = 1e-22
 Identities = 57/131 (43%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
 Frame = +1

Query: 202 IEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXX- 378
           I+KIV +I+ L LLEVSEL+++LK  L + D                             
Sbjct: 66  IKKIVDDISKLTLLEVSELNELLKVTLKIQDVPMMAAGAMSAPAAAQEAASEEPEKEAEP 125

Query: 379 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKEA 558
           T FTVK+T FD   KV LIKE+K L+ G NLVQAKKFVE +P  V+  ++K+E+E+LK+A
Sbjct: 126 TEFTVKLTGFDAAAKVKLIKEIKNLIPGMNLVQAKKFVEGLPQNVREKVNKEESEQLKKA 185

Query: 559 LTKVGAIIEIE 591
           L   G  +EIE
Sbjct: 186 LEAAGGTVEIE 196


>SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)
          Length = 305

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 38/93 (40%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
 Frame = +1

Query: 202 IEKIVFEITNLNLLEVSELSQVLKKRLNLPDXXXXXXXXXXXXXXXXXXXXXXXXXXXX- 378
           I+KIV +I+ L LLEVSEL+++LK  L + D                             
Sbjct: 213 IKKIVDDISKLTLLEVSELNELLKVTLKIQDVPMMAAGAMSAPAAAQEAASEEPEKEAEP 272

Query: 379 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQ 477
           T FTVK+T FD   KV LIKE+K L+ G NLVQ
Sbjct: 273 TEFTVKLTGFDAAAKVKLIKEIKNLIPGMNLVQ 305


>SB_8847| Best HMM Match : RVT_1 (HMM E-Value=5.5)
          Length = 250

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
 Frame = +1

Query: 121 LRQEVTQTVTPLTIP---VPEGVXKPVSPKIEKIV 216
           L  EV +TVTP+ +P   VP  V +P++ +++++V
Sbjct: 53  LHLEVDKTVTPVALPVRKVPFAVIEPLNRELDRLV 87


>SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +1

Query: 127 QEVTQTVTPLTIP--VPEGVXKPVSPKIEKIVFEITNLNLLEVSE 255
           Q VTQ+VTP++ P   P+ V  PVS  + K V + +N N++  SE
Sbjct: 181 QLVTQSVTPVSHPSQSPQSVT-PVS-SVTKSVTQCSNTNVIVFSE 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,610,325
Number of Sequences: 59808
Number of extensions: 258016
Number of successful extensions: 691
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)