Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_L22
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 221 9e-59
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 111 2e-25
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 107 1e-24
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 107 2e-24
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 107 2e-24
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 94 2e-20
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 90 3e-19
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 90 4e-19
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 89 5e-19
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 89 7e-19
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 87 3e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 86 6e-18
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 85 1e-17
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 84 3e-17
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 80 3e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 79 1e-15
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 77 3e-15
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 76 5e-15
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 65 1e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 59 8e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 54 2e-08
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 53 4e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 50 3e-07
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 32 0.11
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 31 0.26
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.79
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 27 2.4
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 26 5.5
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 26 5.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 7.3
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 221 bits (540), Expect = 9e-59
Identities = 104/161 (64%), Positives = 127/161 (78%)
Frame = +2
Query: 332 DDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASI 511
D +K ++K P D R KT DVT TRG EFE++ LKRELLMGIFE G+E+PSPIQE SI
Sbjct: 16 DRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESI 75
Query: 512 PIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIEL 691
PIALSG+D+LARAKNGTGKT A+ IP LE+VD KK IQ LI+VPTRELALQTSQ+C L
Sbjct: 76 PIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTL 135
Query: 692 AKHTDIRVMVTTGGTNLRXDIMRIYQNVQVIIAXPGRMIDL 814
KH +++VMVTTGGT LR DI+R+ V +++ PGR++DL
Sbjct: 136 GKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDL 176
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 111 bits (266), Expect = 2e-25
Identities = 56/145 (38%), Positives = 87/145 (60%), Gaps = 3/145 (2%)
Frame = +2
Query: 386 KTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTG 565
K + T + F+ L R +L G+ G+E P+ IQ+ +IP+AL GKD++ A G+G
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 566 KTGAYCIPVLEQV--DPKK-DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGT 736
KT A+ +P+LE++ PKK T + LI+ PTRELA+Q + ++A TDI V + GG
Sbjct: 309 KTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGL 368
Query: 737 NLRXDIMRIYQNVQVIIAXPGRMID 811
+L+ + + ++IA PGR ID
Sbjct: 369 SLKLQEQELRKRPDIVIATPGRFID 393
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 107 bits (258), Expect = 1e-24
Identities = 53/131 (40%), Positives = 81/131 (61%)
Frame = +2
Query: 422 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 601
F++ LK ELL GI+ G+E+PS IQ+ +I L +DVLA+A++GTGKT + I VL++
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 602 VDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQV 781
+D QALI+ PTRELA Q ++ + L ++ GGT +R D+ + V V
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHV 140
Query: 782 IIAXPGRMIDL 814
++ PGR+ D+
Sbjct: 141 VVGTPGRVHDM 151
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 107 bits (256), Expect = 2e-24
Identities = 51/133 (38%), Positives = 80/133 (60%)
Frame = +2
Query: 416 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 595
+ FEE LK +LL GI+ G+E PS +Q +I G+DV+A+A++GTGKT + I +L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 596 EQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNV 775
+ +D QALI+ PTRELA+Q + + L H +++ GGT++ DI ++
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQ 140
Query: 776 QVIIAXPGRMIDL 814
V+ PGR+ D+
Sbjct: 141 HVVSGTPGRVTDM 153
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 107 bits (256), Expect = 2e-24
Identities = 62/189 (32%), Positives = 100/189 (52%), Gaps = 2/189 (1%)
Frame = +2
Query: 254 TENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDTRGNEFEEF 433
T+N+ +VG ++S +D G K+ +RR K N F+
Sbjct: 25 TDNQKDKHENVGENVSD---------EDDGNYIASKLLESNRRTKGKKGNGKASN-FQSM 74
Query: 434 CLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDP- 610
L + LL IF+KG++ P+PIQ +IP+ L G+DV+ A+ G+GKT A+ IP++E +
Sbjct: 75 GLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKST 134
Query: 611 -KKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQVII 787
+ALI+ P RELALQT ++ + +K TD+R + GG +L + +++
Sbjct: 135 LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVV 194
Query: 788 AXPGRMIDL 814
A PGR + L
Sbjct: 195 ATPGRFLHL 203
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 94.3 bits (224), Expect = 2e-20
Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
Frame = +2
Query: 422 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 601
F +F LK ELL I + G+E PS +Q+ IP ++ G DVL +AK+G GKT + + L+Q
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 602 VDPKKDTIQALIVVPTRELALQTSQICIELAKH-TDIRVMVTTGGTNLRXDIMRI---YQ 769
++P + L++ TRELA Q +K+ D+R V GG N++ D+ +
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 770 NVQVIIAXPGRM 805
+ +++A PGR+
Sbjct: 173 SPHIVVATPGRL 184
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 90.2 bits (214), Expect = 3e-19
Identities = 46/136 (33%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
Frame = +2
Query: 422 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 601
FEE +L + + G+E P+PIQ+ + P+A+SG+D++ + G+GKT +YC+P +
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 602 VDPKK-----DTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIY 766
++ + D L++ PTRELA+Q Q C + K + IR GG I +
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI 243
Query: 767 QNVQVIIAXPGRMIDL 814
+ V++ IA PGR++D+
Sbjct: 244 RGVEICIATPGRLLDM 259
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 89.8 bits (213), Expect = 4e-19
Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 5/152 (3%)
Frame = +2
Query: 371 KDRRIKTSDVTDTRGNEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARA 550
K + S +D +F + L + I E G+E + IQ+ SIP L+G+DVL A
Sbjct: 76 KSVNLNASSTSDIE--KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAA 133
Query: 551 KNGTGKTGAYCIPVLEQV-----DPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRV 715
K G+GKT A+ IP +E + P+ T +I+ PTRELALQ + EL K+
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKPRNGT-GVIIISPTRELALQIFGVAKELLKYHHQTF 192
Query: 716 MVTTGGTNLRXDIMRIYQNVQVIIAXPGRMID 811
+ GG N R + ++ + V +++A PGR++D
Sbjct: 193 GIVIGGANRRAEADKLVKGVNLLVATPGRLLD 224
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 89.4 bits (212), Expect = 5e-19
Identities = 64/204 (31%), Positives = 112/204 (54%), Gaps = 10/204 (4%)
Frame = +2
Query: 233 DKFGKMMTENRISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDR-RIKTSDV-TD 406
D+ G +TEN + S + + T E + +S L IP K+ R+K +D+ D
Sbjct: 49 DRLGPKITENVDAKSEQ--DKATNTIAEDANTKQSENDESNL-IPNKNEVRVKLADLQAD 105
Query: 407 TRG-----NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSG--KDVLARAKNGTG 565
FEE LK ELL GI+ ++KPS IQE ++P+ LS ++++ ++++GTG
Sbjct: 106 PNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTG 165
Query: 566 KTGAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLR 745
KT A+ + +L +VD QA+ + P+RELA Q + E+ K+T+++ T G ++
Sbjct: 166 KTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK---TAFG--IK 220
Query: 746 XDIMRIYQ-NVQVIIAXPGRMIDL 814
+ + + + Q++I PG ++DL
Sbjct: 221 DSVPKGAKIDAQIVIGTPGTVMDL 244
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 89.0 bits (211), Expect = 7e-19
Identities = 50/135 (37%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Frame = +2
Query: 419 EFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE 598
+F+E + +L G+ K +++P+PIQ A+ P L+G+DV+ A+ G+GKT A+ IP L+
Sbjct: 168 QFDELDVSAKLREGL--KNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225
Query: 599 QVD---PKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQ 769
++ K + L+V PTRELA+QT + L + T+++ +V GG + + R +
Sbjct: 226 YLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-KSEQARAAK 284
Query: 770 NVQVIIAXPGRMIDL 814
N VII PGR++DL
Sbjct: 285 NASVIIGTPGRLLDL 299
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 87.0 bits (206), Expect = 3e-18
Identities = 50/127 (39%), Positives = 72/127 (56%), Gaps = 2/127 (1%)
Frame = +2
Query: 431 FCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDP 610
F L E+L + + G+ KP PIQ IP A G D++ +A G+GKT A+ IP+LE
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR 186
Query: 611 KKDT--IQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQVI 784
D +QAL+V PTRELA Q Q + +IRVM TGG ++ + ++ V+
Sbjct: 187 NVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVV 246
Query: 785 IAXPGRM 805
+A PGR+
Sbjct: 247 VATPGRL 253
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 85.8 bits (203), Expect = 6e-18
Identities = 43/140 (30%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = +2
Query: 404 DTRGNE----FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKT 571
D++ NE F+E + EL + G++ P+PIQ+ +IP+ L+ +DV+ A+ G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 572 GAYCIPVLEQVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRXD 751
A+ +PV++++ A+++ PTRELA Q S+ + +R +V GG ++
Sbjct: 98 AAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQ 157
Query: 752 IMRIYQNVQVIIAXPGRMID 811
+ + + V++ PGR++D
Sbjct: 158 AVALSKKPHVLVCTPGRLMD 177
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 84.6 bits (200), Expect = 1e-17
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Frame = +2
Query: 422 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLE- 598
F +F L L I + +EKP+ +Q +IP+AL GKD++A+A+ G+GKT AY IP+LE
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 599 -----QVDPKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMR- 760
Q+D + I AL++VPTRELA Q + +L + TN + R
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 761 -IYQNVQVIIAXPGRMI 808
+ ++IA P R +
Sbjct: 136 LLLDLPDIVIATPSRCV 152
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 83.8 bits (198), Expect = 3e-17
Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Frame = +2
Query: 437 LKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK 616
L + + I G+EKP+ IQ +IP SG+DV+ AK G+GKT A+ +P+ + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 617 DTIQ-----ALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQV 781
A+I+ PTRELA+Q + C K +IR GG ++ I + + ++
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEI 544
Query: 782 IIAXPGRMIDL 814
++ PGRMID+
Sbjct: 545 VVCTPGRMIDV 555
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 80.2 bits (189), Expect = 3e-16
Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 18/151 (11%)
Frame = +2
Query: 416 NEFEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVL 595
NEF L LL I G+ +P+P+Q+ SIPI SG+D++A A+ G+GKT + P+L
Sbjct: 169 NEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
Query: 596 E----------QVD--------PKKDTIQALIVVPTRELALQTSQICIELAKHTDIRVMV 721
VD P+K LI+ PTREL Q + + + +R
Sbjct: 229 SLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCA 288
Query: 722 TTGGTNLRXDIMRIYQNVQVIIAXPGRMIDL 814
GG ++R I +I Q ++ A PGR++DL
Sbjct: 289 VYGGADIRAQIRQIDQGCDLLSATPGRLVDL 319
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 78.6 bits (185), Expect = 1e-15
Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Frame = +2
Query: 332 DDVGWKSKL--KIPPKDRRIKTSDVT-DTRGNE-------FEEFCLKRELLMGIFEKGWE 481
DDV W+ K + P+D RI D +G++ +EE L E+L + + ++
Sbjct: 211 DDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYK 270
Query: 482 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPV---LEQVDPKKDTIQ-----ALI 637
+PS IQ A+IP+ L KD++ A+ G+GKT A+ IP+ + ++ P ++ A++
Sbjct: 271 EPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVV 330
Query: 638 VVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQVIIAXPGRMID 811
+ PTRELA Q + A+ R + GG ++ Q +++A PGR++D
Sbjct: 331 LAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLD 388
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 77.0 bits (181), Expect = 3e-15
Identities = 38/109 (34%), Positives = 66/109 (60%), Gaps = 4/109 (3%)
Frame = +2
Query: 494 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK----DTIQALIVVPTRELA 661
IQ+ IP AL G+D+L AK G+GKT A+ +P++E + KK D + AL++ PTRELA
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELA 124
Query: 662 LQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQVIIAXPGRMI 808
+QT + +++ + + GG N + + R+ + +++ PGR++
Sbjct: 125 IQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERL-SRMNILVCTPGRLL 172
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 76.2 bits (179), Expect = 5e-15
Identities = 37/111 (33%), Positives = 64/111 (57%)
Frame = +2
Query: 482 KPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKKDTIQALIVVPTRELA 661
+P+ IQE I L G++ + AK G+GKT A+ +P++E+ I ALI+ PTRELA
Sbjct: 29 EPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELA 88
Query: 662 LQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQNVQVIIAXPGRMIDL 814
+Q + L + +++ + GG ++ + + + V++A PGR+ DL
Sbjct: 89 IQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADL 139
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 65.3 bits (152), Expect = 1e-11
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 13/144 (9%)
Frame = +2
Query: 422 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 601
F+ + + L + +G++K +P+Q +IP+ L KD++ A G+GKT AY +P ++
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 602 V---DPKKDTIQALIVVPTRELALQTSQICIELAKHTD---------IRVMVTTGGTNLR 745
V D + + ALIV PTRELA Q + EL + + M G L
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 746 XDIMRIYQ-NVQVIIAXPGRMIDL 814
D+ + N V+I PGR+ ++
Sbjct: 123 NDLASFREKNPSVVIGTPGRLNEM 146
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 58.8 bits (136), Expect = 8e-10
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Frame = +2
Query: 473 GWEKPSPIQEASI-PIALSGKDVLARAKNGTGKTGAYCIPVLEQV---DPKKDT--IQAL 634
G+EK +P+Q+ + + + ++ + +AK GTGKT A+ + + V P+ ++ I ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 635 IVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRXDIMRIYQ-NVQVIIAXPGRMID 811
I+ PTRELALQ + +L T IRV GG + + I + N ++IA PGR+ D
Sbjct: 117 ILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLED 176
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 54.4 bits (125), Expect = 2e-08
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Frame = +2
Query: 485 PSPIQEASIPIALS--GKDVLARAKNGTGKTGAYCIPVLEQVD--PKK-----DTIQALI 637
P+ IQ +P L+ KD A+ G+GKT AY +P+++++ PK I A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 638 VVPTRELALQTSQICIELAKHTDIRVMVT---TGGTNLRXDIMRIYQNVQVIIAXPGRMI 808
+ PTREL Q + +L + +V+ GG + + RI + V ++I PGR+
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLA 281
Query: 809 D 811
D
Sbjct: 282 D 282
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 53.2 bits (122), Expect = 4e-08
Identities = 29/106 (27%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Frame = +2
Query: 512 PIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPKK-DTIQALIVVPTRELALQTSQICIE 688
P+ G DV A G+GKT +Y IP+++ + + ++ +++VPTREL +Q ++
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEY 227
Query: 689 LAKHTDIRVMVTTGGTNLRXDIMRIYQN-----VQVIIAXPGRMID 811
++V TG +LR + ++ + + V+++ PGR++D
Sbjct: 228 YMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVD 273
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 50.4 bits (115), Expect = 3e-07
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Frame = +2
Query: 494 IQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVD-PKKDTIQALIVVPTRELALQT 670
IQ +IP S +D+LA A G+GKT AY P+L+++ +A+IV PTREL Q
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 671 SQICIELAKHTDIRVM-VTTGGTNLRXDIMRIYQNVQVIIAXPGRMI 808
+ +L+ T ++++ ++ ++ ++ + + I P R++
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLV 178
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 31.9 bits (69), Expect = 0.11
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Frame = +2
Query: 437 LKRELLMGIF-EKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQVDPK 613
L +EL+ ++ + EK Q +I +G V+ +GK+ Y IP+L+ + +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 614 KDTIQALIVVPTRELALQTSQICIELAKH----TDIRVMVTTGGTNL--RXDIMR 760
+ A V PT+ LA + I++ + +IRV G T L R I+R
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLKNIRVDTFDGDTPLESRESIIR 408
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 30.7 bits (66), Expect = 0.26
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 736 CASCSNHYTNVCVFCQFNTN 677
CA C NH ++C+ CQ NT+
Sbjct: 41 CAICRNHIMDLCIECQANTD 60
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.79
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Frame = -2
Query: 729 PVVTITRMSVCFASSIQICDVWSANSLVGTTIKACIVSFLGSTCSKTGIQ*APVLPV-PF 553
P+ ++ + ASS + V SANS T+ + +S + ST + T P+ V
Sbjct: 307 PLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNST-TATSASSTPLTSVNST 365
Query: 552 LALASTSFPLRAI----GIEAS*IGDGFSHPFSKIPINNSRFKQNSSNSLPLVSVTS 394
A +++S PL ++ AS ++ + ++++ N+S+ LP SV+S
Sbjct: 366 TATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSS 422
>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 29 NSCDVVVEYRVSSPFLNFYLA 91
N ++VEY++ S FL FYLA
Sbjct: 231 NDVPLLVEYKMESGFLRFYLA 251
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = +2
Query: 476 WEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYC-----IPVLEQVDPKKDTIQALIV 640
W P P +A+ P+A + +++ + + + YC IPV K D I+ +
Sbjct: 572 WNAPIPYPDANCPMAPTYRNLTSEQEEMYEEVLKYCLELKEIPVASNSSKKTDLIELERL 631
Query: 641 VPTRELALQ 667
TRE L+
Sbjct: 632 WLTRECILR 640
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 778 LYILINTHYIXSKVCASCSNHYTNVCVFCQFN 683
+Y LI+ + +C+ H VC+FC F+
Sbjct: 222 VYGLISLWWAIRCICSRTKLHLVQVCLFCWFS 253
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 263 RISSSNHVGNSISQTKGEVDKSIDDVGWKSKLKIPPKDRRIKTSDVTDT 409
R+ SS + ++ + E+DK+ D G +KLK PK ++T D+ T
Sbjct: 1315 RVDSSFYTSENLRR---ELDKAFDRSGTAAKLK-HPKKTVVETLDILTT 1359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,702
Number of Sequences: 5004
Number of extensions: 57743
Number of successful extensions: 211
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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