Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_L22
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       86   4e-19
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   5.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 85.8 bits (203), Expect = 4e-19
 Identities = 42/139 (30%), Positives = 85/139 (61%), Gaps = 9/139 (6%)
 Frame = +2

Query: 422 FEEFCLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDVLARAKNGTGKTGAYCIPVLEQ 601
           FE   L+  +L  I + G++KP+P+Q+ ++PI ++G+D++A A+ G+GKT A+ +P++  
Sbjct: 198 FEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIINT 257

Query: 602 -VDPKKDTI--------QALIVVPTRELALQTSQICIELAKHTDIRVMVTTGGTNLRXDI 754
            ++   D +        Q +IV PTREL +Q  Q  ++ + ++ ++ +V  GGT++    
Sbjct: 258 LLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQR 317

Query: 755 MRIYQNVQVIIAXPGRMID 811
            ++     +++A PGR++D
Sbjct: 318 GKLSAGCHILVATPGRLLD 336


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 608 DQPVPKLEYNKHQFYQFH 555
           +QP P  E  + +F+ FH
Sbjct: 493 EQPTPTTESEERRFFSFH 510


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 14  VFG*VNSCDVVVEYRVSSPFLNFYL 88
           +FG + +C V+++        N+YL
Sbjct: 55  IFGNITTCTVIIKNPAMQTATNYYL 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,004
Number of Sequences: 438
Number of extensions: 3875
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)