Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_L20
         (805 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    38   1e-04
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   0.93 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   3.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   3.8  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   6.6  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    22   6.6  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 586 MEKLVSLNMSNNFLSIAQLSNVHELPSLADIDLSVNNILEIQ-TIEGQHPYTSLRHLNLS 762
           ++ L  LN+  N ++         LP L D+DL+ N+I  +   I  Q     + H+N+S
Sbjct: 139 LKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSLDFNIFDQVGSLGMFHVNMS 198

Query: 763 YNYLVGL 783
           +N L+ L
Sbjct: 199 HNKLINL 205



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
 Frame = +1

Query: 442 LNFRDIDFSSNDQSDQFT---VPGYSGLTESLIESLNISSNDIRFTPILTPMEKLVSLNM 612
           L++ D+ ++   Q D  T   +P  + L       L +  N + F  +      L+ LN+
Sbjct: 396 LSWLDLSYNRLGQIDAGTFKGIPRLASLNLGHNSQLTLEINGLSFQGL---EYTLLHLNL 452

Query: 613 SNNFLSIAQLSNVHELPSLADIDLSVNNILEIQTIEGQHPYTSLRHLNLSYNYLVGLP 786
            N  +S++Q+  +   P+L  + L+ N++  +  +E     +SLR+LNL YN L  +P
Sbjct: 453 DN--VSLSQVPAL-STPNLLSLSLAFNSLPTV-ALEVAGNISSLRYLNLDYNDLSAVP 506


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 480 VRSVYSTRIFWTHRKP 527
           +RS   TR+F THRKP
Sbjct: 242 LRSSGETRLFLTHRKP 257


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 262 DENACKYNMVCLGKFSGYQRHYFSVDSFYNTNYYNRNSPTNCVNQIAASVYSNE-KVFPI 438
           ++ +C+YN+V + + S Y+     V   +     +     N   QI A   S+  +    
Sbjct: 188 EDYSCEYNLVWIKEESIYEERISVVSGLHEATLTDLALGENYTVQIMAKSESSPFESLKK 247

Query: 439 ALNFR 453
           +LNFR
Sbjct: 248 SLNFR 252


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +1

Query: 325 YFSVDSFYNTNYYNRNSPTNCVNQIAASVYSNEKVFPIAL 444
           YF    FY ++++   S     ++ +A+  +  + FP++L
Sbjct: 4   YFEQSGFYGSHHHQSGSVAGHHHEQSAAAAAAYRSFPLSL 43


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 397 IAASVYSNEKVFPIALNF 450
           IA + Y NEK+  + +N+
Sbjct: 176 IAVTAYQNEKITKLKINY 193


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 308 LNLPRQTILYLHAFSSKLKLHGPD 237
           L LP+ TI +LH +      H PD
Sbjct: 96  LKLPKSTITHLHIYDLH---HNPD 116


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,553
Number of Sequences: 336
Number of extensions: 3643
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)