Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_L20
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    28   0.088
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.9  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 28.3 bits (60), Expect = 0.088
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 604 LNMSNNFLS-IAQLSNVHELPSLADIDLSVNNILEIQTIEGQHPYTSLRHLNLSYNYLVG 780
           L++S N ++ + + S + +L  L ++ L  N I+EI   +     T LR  N SYN L  
Sbjct: 217 LDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAG-DALTGLTVLRTFNASYNSLDS 275

Query: 781 LPD 789
           LP+
Sbjct: 276 LPE 278



 Score = 24.6 bits (51), Expect = 1.1
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +1

Query: 592 KLVSLNMSNNFLSIAQLSNVHELPSLADIDLSVNNILEIQTIEGQHPYTSLRHLNLSYNY 771
           +L+ LN+S N L+        +L  L  +DL  N+I  I++     P  +L  L LS N 
Sbjct: 336 RLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIES-NAFLPLYNLHTLELSDNK 394

Query: 772 L 774
           L
Sbjct: 395 L 395


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 346 YNTNYYNRNSPTNCVNQIAASVYSN 420
           YN N YN N+  N  N     +Y N
Sbjct: 333 YNNNNYNNNNYNNNYNNNCKKLYYN 357


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 340 SFYNTNYYNRNSPTNCVNQIAASVYSN-EKVFPIALNFRDI 459
           + +N N YN N+  N  N    + Y+N +K++   +N   I
Sbjct: 322 TIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQI 362


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 301 KFSGYQRHYFSVDSFYNTNYYN 366
           K+S Y  +  + ++ YN NY N
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNN 111


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 301 KFSGYQRHYFSVDSFYNTNYYN 366
           K+S Y  +  + ++ YN NY N
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNN 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,023
Number of Sequences: 438
Number of extensions: 3754
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)