Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_L19
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical pr... 155 2e-38
U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein. 30 1.3
L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine t... 30 1.3
AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated... 30 1.3
Z70034-8|CAA93857.1| 586|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL110490-10|CAB54446.1| 430|Caenorhabditis elegans Hypothetical... 29 4.0
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z69902-3|CAA93768.1| 305|Caenorhabditis elegans Hypothetical pr... 28 6.9
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 6.9
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 6.9
AC006680-8|AAK72298.1| 355|Caenorhabditis elegans Serpentine re... 28 6.9
Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical pr... 27 9.2
AF022980-12|AAG24186.1| 515|Caenorhabditis elegans Hypothetical... 27 9.2
>U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical
protein T12A2.15a protein.
Length = 713
Score = 155 bits (377), Expect = 2e-38
Identities = 76/186 (40%), Positives = 111/186 (59%), Gaps = 1/186 (0%)
Frame = +2
Query: 116 YLVGYMQWSVAWLIGPVILSVMRDQ-WRKENEYKRNIAKVAALSSEKDVILARLDDLPSW 292
+ +G +S W++ +I SV + WRK +R IA A E++VI+A+L DLP+W
Sbjct: 21 FFLGKWDYSFVWVLIIIIASVTKSYLWRKRE--RRLIALRATALREREVIMAQLQDLPAW 78
Query: 293 VFFPDVERAEWLNRILLQVWPNVNSYAKTLLKDLIEPAVAESLANYKLSGFKFERMILGT 472
V FPD ER EWLN+++ Q+WP V Y KT + D I P V + FKF +M +G
Sbjct: 79 VQFPDTERVEWLNKVIHQLWPYVGEYTKTFMNDFIIPQVKAQMPG-MFKNFKFTKMDMGD 137
Query: 473 IAPRVGGVKVYDKNLSRNEIIMDIDLFYAGDCDISFVLQRIRGGIKDLQIHGMVRVVMKP 652
I RVGG+KVY N+ R+ II+D+D+ YAGD D + GG+ ++Q G +R ++KP
Sbjct: 138 IPCRVGGIKVYTTNVGRDRIIVDMDVAYAGDADFTVSCCGFTGGMNNIQFSGKLRAILKP 197
Query: 653 LISKIP 670
L+ P
Sbjct: 198 LLPYPP 203
>U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein.
Length = 532
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 89 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 193
+ VS+ G+VY + + +S+A+ GP+I + W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425
>L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine
transporter protein.
Length = 532
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 89 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 193
+ VS+ G+VY + + +S+A+ GP+I + W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425
>AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated
protein 17, isoform a protein.
Length = 532
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 89 KKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 193
+ VS+ G+VY + + +S+A+ GP+I + W
Sbjct: 391 RHVSVYGSVYAIADISYSLAYAFGPIIAGWIVTNW 425
>Z70034-8|CAA93857.1| 586|Caenorhabditis elegans Hypothetical
protein C18E9.8 protein.
Length = 586
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = -2
Query: 637 TYHAMNLEIFDSSANALKYE*DVAIAGVE*VYVHDDFIPREILIINLDATNPRRNGTENH 458
++H M+LEI S AL+ E AG + P I+ I +D N NG E
Sbjct: 16 SFHEMDLEILKESQKALREE-----AGGKEEVEETVENPNPIVFIAVDDQN-LPNGEEED 69
Query: 457 TFKFKSAEFVIGQTLRD 407
+F F+ +F + Q + +
Sbjct: 70 SFIFEKLQFRVKQVMEN 86
>AL110490-10|CAB54446.1| 430|Caenorhabditis elegans Hypothetical
protein Y48B6A.10 protein.
Length = 430
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = -2
Query: 652 RFHYNTYHAMNLEIFDSSANALKYE*DVAIAGVE*VYVHDDFIPREILIINLDATNPRRN 473
+ ++N H N+ + D+ L+Y+ D V+ I + D NPR+
Sbjct: 322 KLYHNDAHCRNVLLTDTDDEYLEYKPDGGAVKVKSYEKKLTII--DFGEATFDVPNPRK- 378
Query: 472 GTENHTFKFKSAEFVIGQTLRDSRF 398
+H F + A+F+I +T D+R+
Sbjct: 379 -WPSHRFVSRLADFLIRRTTEDTRY 402
>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
protein T21C9.2 protein.
Length = 1058
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 310 RTSRMVEQDTPTSLAECEQLRKDFIEGPDRTG 405
+ + + E TPT L+EC +L K+F D+ G
Sbjct: 680 KNASVTEATTPTQLSECIKLVKEFQSKCDKEG 711
>Z69902-3|CAA93768.1| 305|Caenorhabditis elegans Hypothetical
protein C47D12.4 protein.
Length = 305
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 523 PREILIINLDATNPRRNGTENHTFKFKSAEFV 428
P E II L+ TN R+ +N ++FK+ EF+
Sbjct: 241 PLEKTII-LEGTNSRQRSEDNRFYRFKNCEFL 271
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 182 RDQWRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFPDVERAEW 325
+ Q +K ++ KRN + A + ++ + PSW PD + AEW
Sbjct: 1665 QQQQQKSSKKKRNDNRTAQNRTAENGVKRATTPPPSWREEPDYDGAEW 1712
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 182 RDQWRKENEYKRNIAKVAALSSEKDVILARLDDLPSWVFFPDVERAEW 325
+ Q +K ++ KRN + A + ++ + PSW PD + AEW
Sbjct: 1665 QQQQQKSSKKKRNDNRTAQNRTAENGVKRATTPPPSWREEPDYDGAEW 1712
>AC006680-8|AAK72298.1| 355|Caenorhabditis elegans Serpentine
receptor, class t protein6 protein.
Length = 355
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 56 NSVFSMMYTFLKKVSIVGAVYLVGYMQWSVAWLIGPVILSVMRDQW 193
N F + + F KKV LVGY WS+ + PV+ SV W
Sbjct: 138 NPNFPLEFVFRKKVFYFVLGALVGYSFWSLLF-TKPVLFSVEYSCW 182
>Z81525-3|CAB04258.1| 467|Caenorhabditis elegans Hypothetical
protein F33A8.4 protein.
Length = 467
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +1
Query: 13 RCKQNCLTTRQ**WQQCFFYDVHISQKGVDCRSCVLSRLYAMERCV 150
RC Q C + Q W C D + + V C C LY RC+
Sbjct: 420 RC-QACTSVEQGKWNHCEKCDKCVKPRYVHCAQCARCHLYG--RCI 462
>AF022980-12|AAG24186.1| 515|Caenorhabditis elegans Hypothetical
protein T03D3.1 protein.
Length = 515
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 209 YKRN-IAKVAALSSEKDVILARLDDLPSWVFFPDVERAEWLNRILLQVW-PNVNSYAKTL 382
Y RN I K+ A DV+ A ++L + FPDV R + W N N ++
Sbjct: 33 YLRNTIGKLLARGHNVDVVFAVYNELANLDLFPDVRRIYYNRHADPDYWKKNANHFSNMF 92
Query: 383 LK 388
K
Sbjct: 93 EK 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,460
Number of Sequences: 27780
Number of extensions: 325365
Number of successful extensions: 881
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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