Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_L16
(686 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.0
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.0
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.0
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.0
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.0
AM292376-1|CAL23188.2| 402|Tribolium castaneum gustatory recept... 23 1.8
AM292332-1|CAL23144.2| 344|Tribolium castaneum gustatory recept... 23 1.8
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 22 5.4
AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein pr... 21 7.2
AM292381-1|CAL23193.2| 364|Tribolium castaneum gustatory recept... 21 7.2
AF227923-1|AAF36721.1| 351|Tribolium castaneum abdominal-B prot... 21 9.5
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 289 KPFSNEGKPLVVQFTVKHEQDID 357
+P +NE +PL V+F + +Q ID
Sbjct: 20 RPVANESEPLEVKFGLTLQQIID 42
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 289 KPFSNEGKPLVVQFTVKHEQDID 357
+P +NE +PL V+F + +Q ID
Sbjct: 20 RPVANESEPLEVKFGLTLQQIID 42
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 289 KPFSNEGKPLVVQFTVKHEQDID 357
+P +NE +PL V+F + +Q ID
Sbjct: 20 RPVANESEPLEVKFGLTLQQIID 42
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 289 KPFSNEGKPLVVQFTVKHEQDID 357
+P +NE +PL V+F + +Q ID
Sbjct: 20 RPVANESEPLEVKFGLTLQQIID 42
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 24.2 bits (50), Expect = 1.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 289 KPFSNEGKPLVVQFTVKHEQDID 357
+P +NE +PL V+F + +Q ID
Sbjct: 20 RPVANESEPLEVKFGLTLQQIID 42
>AM292376-1|CAL23188.2| 402|Tribolium castaneum gustatory receptor
candidate 55 protein.
Length = 402
Score = 23.4 bits (48), Expect = 1.8
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 181 FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 282
FGK T FFSD + D + D Y L R
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISD-NLYILCR 235
>AM292332-1|CAL23144.2| 344|Tribolium castaneum gustatory receptor
candidate 11 protein.
Length = 344
Score = 23.4 bits (48), Expect = 1.8
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 181 FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSR 282
FGK T FFSD + D + D Y L R
Sbjct: 203 FGKINRTMRSFFSDNKQDDKIPQISD-NLYILCR 235
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 21.8 bits (44), Expect = 5.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -2
Query: 145 FPTNHQETSPQRIH 104
FP NH P+++H
Sbjct: 41 FPLNHLNEEPEKLH 54
>AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein
protein.
Length = 392
Score = 21.4 bits (43), Expect = 7.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2
Query: 50 SCCTWSLSACW 82
S CT LS+CW
Sbjct: 31 SACTDDLSSCW 41
>AM292381-1|CAL23193.2| 364|Tribolium castaneum gustatory receptor
candidate 60 protein.
Length = 364
Score = 21.4 bits (43), Expect = 7.2
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -2
Query: 232 HPLGR*RTFQQSI*TFQILFLGAHCTPNCFPTN 134
+P+G S+ F ++FL CT C N
Sbjct: 133 YPVGIVGVKNASLFIFDLIFLSFRCTKLCKEAN 165
>AF227923-1|AAF36721.1| 351|Tribolium castaneum abdominal-B
protein.
Length = 351
Score = 21.0 bits (42), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 371 YPPPQSMSCSCLTVNWTTKGLP 306
YPPP S+ ++V T G P
Sbjct: 213 YPPPGSLGSMGVSVPCGTSGNP 234
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,205
Number of Sequences: 336
Number of extensions: 4269
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -