Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_L16
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 6e-32
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 81 8e-16
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36) 30 2.0
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03) 29 2.7
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_5367| Best HMM Match : wnt (HMM E-Value=0) 29 4.7
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 134 bits (324), Expect = 6e-32
Identities = 61/92 (66%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Frame = +1
Query: 106 VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRK 285
V F EKF D SWE WV S G + GKFK TAGKF+ D E DKG++TSEDA+FY +S K
Sbjct: 756 VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKFYGISAK 815
Query: 286 F-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 378
F KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 816 FEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/72 (63%), Positives = 53/72 (73%)
Frame = +1
Query: 469 KKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXADWD 648
K + + FS K + ++ KDD THLYTLIV+PDNTYEV IDNEKVESG+L DWD
Sbjct: 825 KTLVIQFSVKHEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKIDNEKVESGELEKDWD 884
Query: 649 FLPPKKIKDPEA 684
FLPPK IKDPEA
Sbjct: 885 FLPPKTIKDPEA 896
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 81.0 bits (191), Expect = 8e-16
Identities = 48/110 (43%), Positives = 62/110 (56%), Gaps = 12/110 (10%)
Frame = +1
Query: 388 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKDIRCK--------- 537
C L Q+ +TPY IMFGPD CG +K+H IF +K KN I++ K
Sbjct: 28 CHLFQESFGDKTPYTIMFGPDKCGED-RKLHFIFRHKNPKNGTIEEKHAKKPTGNYNSVF 86
Query: 538 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXADW--DFLPPKKIKDPE 681
D THL+TL+V+PDNT+EV ID E V G L D PP +I+DP+
Sbjct: 87 DGKKTHLFTLVVRPDNTFEVFIDQESVNKGSLLEDMTPPVNPPAEIEDPD 136
>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = -1
Query: 365 PPQSMSCSCLTVNWTTKGLPSLLNG---LNLRERA*NLASSEVFKPLSSSGSLKNFPAVN 195
P + SC CL V W T GLP L++G L R L+ + P S SL + V
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHGTVALISFRRKRTLSGGSL--PRGRSRSLSS-DRVG 485
Query: 194 LNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNA 81
P++ G + + S+G+ S+ +SQ D A
Sbjct: 486 TRLPSARKGSASKIGIPRTSSTGSLGSRRSSQSSTDGA 523
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 326 WTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNF 207
+TT+GLPS ++ +NL E NL S KP S + ++
Sbjct: 959 YTTQGLPSKISSVNLTEALSNLISISWSKPSDGSSLITDY 998
>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
Length = 551
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 523 DIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLXADWD 648
D+ CKDD V D T E L+D+ +V+S L D D
Sbjct: 485 DVSCKDDKNRTALHWAVGQDKTIEGLLDDPRVQSLQLVNDQD 526
>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
Length = 1832
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 275 SPVSSNRSVMRVNPWSSSSLSNMNKTLTVEADTLRSLTANWSRRTCTER-PHMRLCSALT 451
SP SS + +++P + + +N DTL + T+N+ T + P +
Sbjct: 900 SPASSEKCTEKLSPRDNKAKEKLNGPSKQRQDTLGTKTSNYDHNTAKKNTPKATVLEESA 959
Query: 452 SVVQAPRR 475
S+ A RR
Sbjct: 960 SLTSANRR 967
>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 168 VLTVHPIAFPRIIRKLLLKEYI 103
+LT H + P++IRK+ LK+Y+
Sbjct: 73 LLTAHLVVAPKLIRKMPLKDYV 94
>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
Length = 367
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = -2
Query: 628 RQIQLSHCQ*GLHRCCQVSQSECTNVCRHHLCS 530
+++Q + C+ H CC+V C H+C+
Sbjct: 335 KEVQATRCRCKFHWCCKVKCKTCIKNVTTHICN 367
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,885,588
Number of Sequences: 59808
Number of extensions: 537937
Number of successful extensions: 1300
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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