Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_L13
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0426 + 25125590-25125670,25126171-25126256,25126423-251264...    30   2.5  
02_04_0598 + 24216556-24216636,24217871-24217956,24218083-24218251     30   2.5  

>04_04_0426 +
           25125590-25125670,25126171-25126256,25126423-25126471,
           25126547-25126675,25126973-25127055,25127791-25127959,
           25128038-25128103
          Length = 220

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 26  HQFIFHASIFXLXFFXWGVXVIFLAKIXKF---IVSLY 130
           HQFI HA++  +    W    +FL  + +F   +VS+Y
Sbjct: 35  HQFILHAALDVVQDLAWSTNAMFLKSVDRFNDLVVSVY 72


>02_04_0598 + 24216556-24216636,24217871-24217956,24218083-24218251
          Length = 111

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 26  HQFIFHASIFXLXFFXWGVXVIFLAKIXKF---IVSLY 130
           HQFI HA++  +    W    +FL  + +F   +VS+Y
Sbjct: 35  HQFILHAALDVVQDLAWATNTMFLKSVDRFDDLVVSVY 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,884,538
Number of Sequences: 37544
Number of extensions: 92448
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)