Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_L09
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    29   0.92 
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces...    26   4.9  
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    26   4.9  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    26   6.5  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   6.5  
SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1 famil...    26   6.5  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   8.6  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   8.6  

>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 169 FYRMSPFNQSMHRDRYRMSPFNQFRDVVEPQFYRPWENTLRQIEN 303
           FYR+S  N    +  Y          + +P F R W+NT  +I+N
Sbjct: 7   FYRLSSKNLLSFKTCYSFYSTKASSPLPQPSFRRFWKNTATKIQN 51


>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 523 FIRRYALPQGCLPDTVESKLSSDGVLTVTAPKV 621
           F R   +P     D +E+  S+ G+LTVT PKV
Sbjct: 100 FSRTITIPAKIDADRIEANFSN-GLLTVTLPKV 131


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 178 MSPFNQSMHRDRYRMSPFNQFRDVVEPQFYRPWENTLR-QIENVMKPIEQLAS 333
           + P N+    +  +   F  F D+V PQ  RPW    R  I    KP ++ A+
Sbjct: 85  LGPVNEVEEAEMLKWMCFINF-DIVTPQNVRPWVGMFRGNIPYEEKPFKESAT 136


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 184 PFNQSMHRDRYRMSPFNQFRDVVEPQFYRPWENTL 288
           PF+ S+  DRY++SP++  R+  +P  Y    N L
Sbjct: 280 PFS-SLPLDRYQISPYSCLRNTGDPWEYMSRSNGL 313


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 626 ASTLGAVTVRTPSEDNFDSTVSGKQPCGSAYRLMN 522
           A+ +GA+ +   S +N  S + GK+ C S  R+M+
Sbjct: 700 ATPIGAIRIHLRSANNLHSKIPGKK-CDSYARIMS 733


>SPBC3B8.08 |||Sjogren's syndrome/scleroderma autoantigen 1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 553 CLPDTVESKLSSDGVLTVTAPKVLALP---STGEKIVPITHTGPVMKKVGSQEPSAVTV 720
           C+ D  ES  S    +  +APK+ +LP   +   +    T   PVM++  S   + ++V
Sbjct: 47  CINDLKESDASEHVTVAESAPKIASLPISKTNDAERSQQTTKAPVMERTESSHQATLSV 105


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 86  KRCQFCHTCTIWRDHFV*WIEN 151
           K C+ C+ C    DH   WI N
Sbjct: 172 KHCRLCNICVEKFDHHCIWINN 193


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 296 ICRKVFSQGL*NCGSTT 246
           +C ++F+ G  NCGSTT
Sbjct: 2   LCFQLFAMGCPNCGSTT 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,278
Number of Sequences: 5004
Number of extensions: 58358
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)