Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_L09
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 36 0.045
03_02_0484 + 8805053-8805538 36 0.045
03_02_0483 - 8804021-8804485 36 0.045
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 36 0.045
01_01_0229 - 1943473-1943922 36 0.045
03_02_0478 + 8775892-8776377 35 0.059
01_01_0231 + 1951047-1951499 35 0.078
11_02_0041 - 7669692-7670312 34 0.14
01_01_0227 + 1933247-1933699 34 0.14
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 33 0.32
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830 31 0.73
02_05_0494 + 29486960-29487454 29 2.9
04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317... 29 3.9
01_01_0599 - 4448290-4448790 29 3.9
01_01_0228 + 1940149-1940649 29 3.9
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381... 29 5.2
08_01_0863 + 8437188-8437337,8437649-8437739,8437913-8438002,843... 29 5.2
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 29 5.2
04_04_0947 - 29583775-29583931,29584030-29584256 28 6.8
04_03_0228 + 13004688-13005044 28 9.0
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 28 9.0
03_03_0165 + 14982725-14984128 28 9.0
>03_02_0485 - 8808139-8808618
Length = 159
Score = 35.5 bits (78), Expect = 0.045
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 514 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 618
S +F+RR+ LP+ P+ +++ + +GVLTVT PK
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 144
>03_02_0484 + 8805053-8805538
Length = 161
Score = 35.5 bits (78), Expect = 0.045
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 514 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 618
S +F+RR+ LP+ P+ +++ + +GVLTVT PK
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 146
>03_02_0483 - 8804021-8804485
Length = 154
Score = 35.5 bits (78), Expect = 0.045
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +1
Query: 514 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 618
S +F+RR+ LP+ P+ +++ + +GVLTVT PK
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 139
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 35.5 bits (78), Expect = 0.045
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 514 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 618
S QF+RR+ LP+ D V++ L +GVLTVT PK
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.5 bits (78), Expect = 0.045
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 514 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 618
S QF+RR+ LP+ D V++ + +GVLTVT PK
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>03_02_0478 + 8775892-8776377
Length = 161
Score = 35.1 bits (77), Expect = 0.059
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +1
Query: 514 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 618
S +F+RR+ LP P+ +++ + + GVLTVT PK
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASMEN-GVLTVTVPK 146
>01_01_0231 + 1951047-1951499
Length = 150
Score = 34.7 bits (76), Expect = 0.078
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 514 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 618
S QF+RR+ LP+ D V++ + +GVLTVT PK
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>11_02_0041 - 7669692-7670312
Length = 206
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 520 QFIRRYALPQGCLPDTVESKLSSDGVLTVTAPKVLALPSTGEKIVPITHTG 672
+F RR+ +P G V ++L DGVLTVT PKV ++V I G
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHRGREPRVVAIDGAG 190
>01_01_0227 + 1933247-1933699
Length = 150
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 514 SRQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 618
S +F RR+ LP+G D V + + +GVLTVT PK
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPK 135
>09_04_0512 +
18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 294 NRKRNETDRAAGFGDESNGASGDGL*NHIQRREVSG-QYRRTTFFTG*NKC 443
+R+RN DR + +NG S DGL + ++R +++G + RTT + C
Sbjct: 148 SRQRNIEDRLRERDEAANGGSSDGLQDRMERSKIAGVRLNRTTTSSSSEPC 198
>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
Length = 763
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 190 NQSMHRDRYRMSPFNQFRDVVEPQFYRPWENT 285
++SMHRDRY P +FR E R WEN+
Sbjct: 117 HRSMHRDRYERQPSGRFRQWPE----RQWENS 144
>02_05_0494 + 29486960-29487454
Length = 164
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 517 RQFIRRYALPQGCLPDTVESKLSSDGVLTVTAPK 618
R + ++ LP+ D ++++ DGVLTVT PK
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPK 138
>04_04_0939 -
29530242-29531087,29531406-29531597,29531690-29531770,
29532300-29532428,29532579-29532650,29532761-29532829,
29533809-29533891,29534101-29534203,29534289-29534402,
29536230-29536274
Length = 577
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 74 RTNKKRCQFCHTCTIWRDHFV*WIENSSARR 166
R N K C+ C C DH W+ N R+
Sbjct: 117 RKNSKHCRSCDKCVDGFDHHCRWLNNCVGRK 147
>01_01_0599 - 4448290-4448790
Length = 166
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 520 QFIRRYALPQGCLPDTVESKLSSDGVLTVTAPKV 621
+F+R++ LP D + S + DGVLTVT K+
Sbjct: 118 KFMRKFVLPDNADVDKI-SAVCQDGVLTVTVEKL 150
>01_01_0228 + 1940149-1940649
Length = 166
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 523 FIRRYALPQGCLPDTVESKLSSDGVLTVTAPKVL 624
F R+ LP + D V + + G+LTVT PKV+
Sbjct: 104 FFGRFHLPDDAVVDLVRASMDG-GMLTVTVPKVV 136
>12_01_1073 +
11135853-11137388,11137627-11137846,11137990-11138178,
11138257-11138457,11138547-11139246,11163479-11164106
Length = 1157
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +3
Query: 129 ISSDGSRTLRPAGFLQDVAFQPIDAS*PLQNVSVQSISRRC*TAVLQT----LGKY 284
+SSD + T+R A L A P+ L N+ + +S RC +AV + LG+Y
Sbjct: 529 LSSDTTNTVRRARELMASAIDPLQLVSQLANLIMDILSGRCQSAVTEVSKSFLGRY 584
>08_01_0863 +
8437188-8437337,8437649-8437739,8437913-8438002,
8438099-8438202,8439137-8439277
Length = 191
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 270 SVKLRFNNVAKLIERRHSVAVTMHRLVERRHPVEILRAEEFSIHQTKWSLQIVH 109
+V++ N + I H AVT + E + P+EIL A+ ++ + Q VH
Sbjct: 84 AVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPRLVYQFVH 137
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 204 MHRLVERRHPVEILRAEEFSIHQTKWSL-QIVHVWQN*HR 88
+H+ +RH +E L ++ S HQ + Q H WQ HR
Sbjct: 737 LHKYANKRHSLEELPSDTSSPHQKHHQMSQEKHHWQQKHR 776
>04_04_0947 - 29583775-29583931,29584030-29584256
Length = 127
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -1
Query: 235 D*TETFCSGHDASIG*KATSCRNPAGRRVLDPSDE 131
D E SGH AS A S R P GR DP D+
Sbjct: 11 DDIEAGFSGHSASPVKPAASPRRPGGRLFCDPCDD 45
>04_03_0228 + 13004688-13005044
Length = 118
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 367 SPSPEAPFDSSPKPAARSVSLRFLFVAK 284
+PS AP S+P PAA +V LR AK
Sbjct: 18 TPSSSAPASSAPPPAAETVVLRLKRRAK 45
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = -2
Query: 267 VKLRFNNVAKLIERRHSVAVTMHRLVERRHPVEILRAEEFSIHQTKWSLQIVHVWQ 100
V LR +A+L RR V RL++RR + R +EF I+ K S+Q W+
Sbjct: 1002 VFLRAGQMAELDARRAEVLANAARLIQRRIKTHLTR-KEF-INLRKASIQSQKFWR 1055
>03_03_0165 + 14982725-14984128
Length = 467
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 502 HGYVSRQFIRRYALP-QGCLPDTVESKLSSDGVLTVTAPKVLALPSTGEKIVPITHTG 672
H Y R+ + Y+L GC + L+ + + T P+ LAL + E I P +TG
Sbjct: 151 HRYGMREDVAAYSLAGMGCSAGLISLDLARNTL--ATRPRALALVVSTESIAPNWYTG 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,631,143
Number of Sequences: 37544
Number of extensions: 377297
Number of successful extensions: 1068
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -