Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_L05
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    28   1.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   4.7  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   8.2  

>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 583 SNSLFLRLSKAFTSSV-LANNSSSN-GAISLNLPSLKSIKLKSNR 455
           S+ L  RLSK   SS+  +NNSSSN G   L  P+L  ++  SN+
Sbjct: 57  SSGLSSRLSKPSLSSINNSNNSSSNTGGNVLPNPALTPVRNMSNK 101


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 516 EEELFAKTDEVKALESRKNKLLEMLNQQAEEKGKRAER 629
           +EE   K +E +    ++ K  E+  Q+ EEK K+ ER
Sbjct: 634 QEEARKKREEQRLKREQEKKQQELERQKREEKQKQKER 671


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 544 SSVLANNSSSNGAISLNLPSLKSI 473
           SS+++NNS   GA+  N  SL+SI
Sbjct: 667 SSLVSNNSLEEGALLKNSESLESI 690


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = +3

Query: 507  APFEEELFAKTDEVKALESRKNKLLEMLNQQ-------AEEKGKRAERLXNLDQDI 653
            A F ++L  K+D ++ L + KN+L+  L Q         EE+   A RL ++ + +
Sbjct: 1133 ANFVDDLKEKSDALEQLTNEKNELIVSLEQSNSNNEALVEERSDLANRLSDMKKSL 1188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,258
Number of Sequences: 5004
Number of extensions: 49570
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)