Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_L05
         (716 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p pro...    44   3e-04
AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein...    44   3e-04
AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subu...    44   3e-04
AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA...    44   3e-04
AE013599-3585|AAF46990.2| 1489|Drosophila melanogaster CG3493-PA...    29   6.3  
AY075577-1|AAL68382.1| 1489|Drosophila melanogaster SD05887p pro...    29   8.4  

>AY118636-1|AAM50005.1| 1238|Drosophila melanogaster SD02122p
           protein.
          Length = 1238

 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 21/55 (38%), Positives = 32/55 (58%)
 Frame = +3

Query: 498 RDIAPFEEELFAKTDEVKALESRKNKLLEMLNQQAEEKGKRAERLXNLDQDIKMF 662
           RDI  F  +L  +  EVKA+E RK    E+L ++ ++ GK    L  +DQ+I+ F
Sbjct: 256 RDIRKFTSDLEVRQQEVKAVEQRKEAADEILREKKKDAGKITRDLAKIDQEIREF 310


>AJ271845-1|CAB76376.1| 1238|Drosophila melanogaster SMC1 protein
           protein.
          Length = 1238

 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 21/55 (38%), Positives = 32/55 (58%)
 Frame = +3

Query: 498 RDIAPFEEELFAKTDEVKALESRKNKLLEMLNQQAEEKGKRAERLXNLDQDIKMF 662
           RDI  F  +L  +  EVKA+E RK    E+L ++ ++ GK    L  +DQ+I+ F
Sbjct: 256 RDIRKFTSDLEVRQQEVKAVEQRKEAADEILREKKKDAGKITRDLAKIDQEIREF 310


>AF225909-1|AAF43149.1| 1238|Drosophila melanogaster cohesin subunit
           protein.
          Length = 1238

 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 21/55 (38%), Positives = 32/55 (58%)
 Frame = +3

Query: 498 RDIAPFEEELFAKTDEVKALESRKNKLLEMLNQQAEEKGKRAERLXNLDQDIKMF 662
           RDI  F  +L  +  EVKA+E RK    E+L ++ ++ GK    L  +DQ+I+ F
Sbjct: 256 RDIRKFTSDLEVRQQEVKAVEQRKEAADEILREKKKDAGKITRDLAKIDQEIREF 310


>AE014297-3454|AAF56231.1| 1238|Drosophila melanogaster CG6057-PA
           protein.
          Length = 1238

 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 21/55 (38%), Positives = 32/55 (58%)
 Frame = +3

Query: 498 RDIAPFEEELFAKTDEVKALESRKNKLLEMLNQQAEEKGKRAERLXNLDQDIKMF 662
           RDI  F  +L  +  EVKA+E RK    E+L ++ ++ GK    L  +DQ+I+ F
Sbjct: 256 RDIRKFTSDLEVRQQEVKAVEQRKEAADEILREKKKDAGKITRDLAKIDQEIREF 310


>AE013599-3585|AAF46990.2| 1489|Drosophila melanogaster CG3493-PA
           protein.
          Length = 1489

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 486 EGRLRDIAPFEEELFAKTDEVKALESRKNKLLEMLNQQAEEKGKRAERLXNLDQDI 653
           E   +D+A  +  L AK  E+KA  ++ NK+ +   Q   +   ++ RL  L  ++
Sbjct: 742 EALSQDLATSQASLLAKEKELKASGNKLNKIKKQHEQHQAKSSDQSARLEALQSEL 797


>AY075577-1|AAL68382.1| 1489|Drosophila melanogaster SD05887p
           protein.
          Length = 1489

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 486 EGRLRDIAPFEEELFAKTDEVKALESRKNKLLEMLNQQAEEKGKRAERLXNLDQDI 653
           E   +D+A  +  L AK  E+KA  ++ NK+ +   Q   +  +++ RL  L   +
Sbjct: 742 EALSQDLATSQASLLAKEKELKASGNKLNKIKKQHEQHQAKSSEQSVRLEALQSQL 797


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,054,971
Number of Sequences: 53049
Number of extensions: 520642
Number of successful extensions: 1384
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)