Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_L03
(569 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24) 38 0.008
SB_14845| Best HMM Match : DUF983 (HMM E-Value=0.015) 32 0.38
SB_34365| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_18691| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2) 30 1.2
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2) 29 2.0
SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3) 29 2.0
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 29 2.7
SB_28337| Best HMM Match : zf-CCHC (HMM E-Value=6e-06) 29 2.7
SB_31844| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_26424| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 29 3.5
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 3.8
SB_24830| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_52181| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_34367| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_22489| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045) 27 8.2
SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)
Length = 1102
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = -1
Query: 326 VDHGCGMDHVCGMNHGCGMDHRGGMYQSGTMVDNLAAXXXXXXXXXXXXSVDNWSMDSS- 150
+++G GM++ GM +G GM++ GM G M +N A + M++
Sbjct: 941 MENGAGMENGAGMENGAGMENGAGMENGGGM-ENGAGMENGAGMENGAGMENGAGMENGA 999
Query: 149 --YHWGFVEEQAGCSGGAGQECGENNE 75
+ G +E AG GAG E G E
Sbjct: 1000 GMENGGGMENGAGMENGAGMENGAGME 1026
Score = 33.9 bits (74), Expect = 0.094
Identities = 13/34 (38%), Positives = 25/34 (73%)
Frame = -1
Query: 326 VDHGCGMDHVCGMNHGCGMDHRGGMYQSGTMVDN 225
+++G GM++ GM +G GM++ GGM ++G ++N
Sbjct: 1031 MENGAGMENGAGMENGAGMENGGGM-ENGAKMEN 1063
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/50 (30%), Positives = 33/50 (66%)
Frame = -1
Query: 374 SGVDDWDRVDNWGSDSVDHGCGMDHVCGMNHGCGMDHRGGMYQSGTMVDN 225
+G+++ ++N G +++G GM++ GM +G GM++ GM ++G ++N
Sbjct: 993 AGMENGAGMENGGG--MENGAGMENGAGMENGAGMENGAGM-ENGAGMEN 1039
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 326 VDHGCGMDHVCGMNHGCGMDHRGGMYQSGTM 234
+++G GM++ GM +G GM++ GM G M
Sbjct: 1025 MENGAGMENGAGMENGAGMENGAGMENGGGM 1055
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = -1
Query: 326 VDHGCGMDHVCGMNHGCGMDHRGGMYQSGTMVDN 225
+++G GM++ GM +G GM++ GM ++G ++N
Sbjct: 1013 MENGAGMENGAGMENGAGMENGAGM-ENGAGMEN 1045
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = -1
Query: 326 VDHGCGMDHVCGMNHGCGMDHRGGMYQSGTMVDN 225
+++G GM++ GM +G GM++ GM ++G ++N
Sbjct: 1019 MENGAGMENGAGMENGAGMENGAGM-ENGAGMEN 1051
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/37 (32%), Positives = 26/37 (70%)
Frame = -1
Query: 326 VDHGCGMDHVCGMNHGCGMDHRGGMYQSGTMVDNLAA 216
+++G GM++ GM +G GM++ G ++G ++NL++
Sbjct: 1037 MENGAGMENGAGMENGGGMEN-GAKMENGAGMENLSS 1072
Score = 29.1 bits (62), Expect = 2.7
Identities = 20/79 (25%), Positives = 33/79 (41%)
Frame = -1
Query: 311 GMDHVCGMNHGCGMDHRGGMYQSGTMVDNLAAXXXXXXXXXXXXSVDNWSMDSSYHWGFV 132
GM++ GM +G GM++ GM ++G ++N + M++ +
Sbjct: 940 GMENGAGMENGAGMENGAGM-ENGAGMENGGGMENGAGMENGAGMENGAGMENG---AGM 995
Query: 131 EEQAGCSGGAGQECGENNE 75
E AG G G E G E
Sbjct: 996 ENGAGMENGGGMENGAGME 1014
>SB_14845| Best HMM Match : DUF983 (HMM E-Value=0.015)
Length = 254
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 383 NYRSGVDDWDRVDNWGSDSVD--HGCGMDHVCGMNHGCGMDH 264
N+ G DD++ G D D H CG D+ NH CG D+
Sbjct: 29 NHDVGEDDYNYNHECGFDYNDYNHECGFDYNDDYNHECGFDY 70
>SB_34365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -1
Query: 383 NYRSGVDDWDRVDNWGSDSVDHGC---GMDHVCGMNHGCGMDHRGG 255
+Y + VDD D + D VDHGC G D+ C N+ G G
Sbjct: 23 DYDNDVDDVDNNGDKDDDDVDHGCNDHGDDNDCDDNYDPGNGGNNG 68
>SB_18691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVPE 244
R+ PR R++PR R+ P+ RN P+
Sbjct: 95 RNDPRTRNDPRTRNDPRTRNDPQ 117
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 89 RNDPRTRNDPRTRNDPRTRNDP 110
>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
Length = 893
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVPE 244
R+ PR R++PR R+ P+ RN P+
Sbjct: 847 RNDPRTRNDPRTRNDPRTRNDPQ 869
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 805 RNDPRTRNDPRTRNDPRTRNDP 826
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 811 RNDPRTRNDPRTRNDPRTRNDP 832
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 817 RNDPRTRNDPRTRNDPRTRNDP 838
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 823 RNDPRTRNDPRTRNDPRTRNDP 844
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 829 RNDPRTRNDPRTRNDPRTRNDP 850
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 835 RNDPRTRNDPRTRNDPRTRNDP 856
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 841 RNDPRTRNDPRTRNDPRTRNDP 862
>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1659
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Frame = -1
Query: 368 VDDWDRVDNWGSD---SVDHGCGMDHVCGMNHGCGMDHRGG 255
VD + N GSD DH G D G NH G DH G
Sbjct: 767 VDAGIKNQNEGSDHTLGADHALGSDRTLGANHTLGADHTLG 807
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = -1
Query: 338 GSD---SVDHGCGMDHVCGMNHGCGMDHR-GGMYQSGT 237
GSD +H G DH G NH G DH G + SG+
Sbjct: 807 GSDRTLGANHTLGADHALGTNHTLGADHALGANHTSGS 844
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = -1
Query: 383 NYRSGVDDWDRVDN-WGSD---SVDHGCGMDHVCGMNHGCGMDHRGG 255
N+ SG D D+ GSD +H G DH G H G+DH G
Sbjct: 839 NHTSGSDRTLGADHALGSDRTLGANHTLGADHTLGTGHTLGIDHTLG 885
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 320 HGCGMDHVCGMNHGCGMDHRGGM 252
H G+DH G H G+DH G+
Sbjct: 876 HTLGIDHTLGTGHTLGIDHTLGI 898
>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 229 RNDPRTRNDPRTRNDPRARNDP 250
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 175 RNDPRTRNDPRTRNDPRTRNDP 196
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 181 RNDPRTRNDPRTRNDPRTRNDP 202
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 187 RNDPRTRNDPRTRNDPRTRNDP 208
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 193 RNDPRTRNDPRTRNDPRTRNDP 214
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVPEW 241
R+ PR R++PR R+ P+ R W
Sbjct: 235 RNDPRTRNDPRARNDPRTRKDSRW 258
>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
Length = 939
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 771 RNDPRTRNDPRTRNDPRTRNDP 792
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 777 RNDPRTRNDPRTRNDPRTRNDP 798
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 783 RNDPRTRNDPRTRNDPRTRNDP 804
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 789 RNDPRTRNDPRTRNDPRTRNDP 810
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P+ RN P
Sbjct: 795 RNDPRTRNDPRTRNDPRTRNDP 816
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P RN P
Sbjct: 801 RNDPRTRNDPRTRNDPSTRNDP 822
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R++PR R+ P RN P
Sbjct: 753 RNDPRTRNDPRTRNDPWTRNDP 774
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVP 247
R+ PR R +PR R+ P+ RN P
Sbjct: 722 RNDPRTRIDPRTRNDPRTRNDP 743
>SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3)
Length = 384
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 200 DHCDQEQPSCQPWFHSGTFRPCGPCRTRGSCRTR 301
DHCD E P P+ G R CG + + R R
Sbjct: 128 DHCDWEAPIVTPFKRDGEVRVCGDFKVTVNPRLR 161
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVPEWNHG 232
R GP RH P R+GP R+ P HG
Sbjct: 130 RSGPPDRHTPPDRNGPPDRHGPPDRHG 156
>SB_28337| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)
Length = 521
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 200 DHCDQEQPSCQPWFHSGTFRPCGPCRTRGSCRTR 301
DHCD E P P+ G R CG + + R R
Sbjct: 188 DHCDWETPIVTPFKKDGEVRVCGDFKVTVNPRLR 221
>SB_31844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRNVPE 244
R+ PR R +PR R+ P+ RN P+
Sbjct: 32 RNDPRTRIDPRTRNDPRTRNDPQ 54
>SB_26424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -1
Query: 371 GVDDWDRVDNWGSDSVDHGCGMDHVCGMNHGCGMDHRGGMYQSG 240
G +D D D+ G D D GCG D+ + G D GG Y G
Sbjct: 536 GDNDEDEDDDGGDDDGD-GCGSDNDNSCDGNGGDDGCGGDYNDG 578
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 362 DWDRVDNWGSDSVDHGCGMDHVCGMNHG 279
DW R DN G+ S+ G DH G N+G
Sbjct: 970 DWTR-DNGGTPSLTTGPSTDHTTGTNNG 996
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 25.4 bits (53), Expect(2) = 3.8
Identities = 11/24 (45%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Frame = +1
Query: 259 PLWSMPHPWFMPH---TWSMPHPW 321
P W PHP PH W P PW
Sbjct: 961 PYWPRPHPRRAPHQYPVWPRP-PW 983
Score = 21.4 bits (43), Expect(2) = 3.8
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = +1
Query: 88 PHSWPAPPLHPACSSTKPQW 147
P SWP P P+ P W
Sbjct: 944 PLSWPKYPYGPSHYRQTPYW 963
>SB_24830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 39
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQ-GRNVP 247
R+ PR R++PR R+ PQ G N P
Sbjct: 6 RNDPRTRNDPRTRNDPQKGPNCP 28
>SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 312 RHGPRVRHEPRVRHGPQGRN 253
R+ PR R++PR R+ P+ RN
Sbjct: 20 RNDPRTRNDPRTRNDPRTRN 39
>SB_52181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3
Query: 300 RVRHEPRVRHGPQGRNVP 247
R+R++PR R+GP+ RN P
Sbjct: 4 RIRNDPRNRNGPRTRNGP 21
>SB_34367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -1
Query: 383 NYRSGVDDWDRVDNWGSDSVDHGC---GMDHVCGMNHGCGMDHRGG 255
+Y + VDD D + D DHGC G D+ C N+ G G
Sbjct: 23 DYDNDVDDVDNNGDKDDDDGDHGCNDHGDDNDCDDNYDPGNGGNNG 68
>SB_22489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 69 KSFIVFTALLACTAAAPGLLLHETPVVAAVHTPVIHTVPIV 191
KSF++F +L +AA + + T +V+ TP IH+ V
Sbjct: 96 KSFLIFICVLNNSAAMSSVFGNLTVIVSIWRTPSIHSPSFV 136
>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
Length = 1050
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -3
Query: 309 HGPRVRHEPRVRHGPQGRNVPEWNH 235
H P H P RH P +VP H
Sbjct: 108 HVPTASHVPSTRHAPTASHVPSTRH 132
>SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 371 GVDDWDRVDNWGSDSVDHGCGMDHVCGMNHGCGMDHRGGMYQSG 240
G D+ D D++G D D+G G G ++G G+D G Y +G
Sbjct: 532 GDDNGDGGDDYGDDGDDYGDG-----GNDNGDGVDDYGDDYGNG 570
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,038,420
Number of Sequences: 59808
Number of extensions: 294247
Number of successful extensions: 977
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -