Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_L02
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.78 
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  27   7.2  

>SB_48582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 478 KPFYCLYNYYTIIFAELAARIIIY-RCFLTQNIHLQIVLASVT 353
           KPF C Y + T++   +  R + Y +C   + IHL I L  +T
Sbjct: 14  KPFRCNYYFSTVLIRVINRRKLAYNQCKAQKRIHLSINLTIIT 56


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 466  CLYNYYTIIFAELAARIIIYRCFLTQNIHLQIVLA 362
            CLY++ +   +  +AR+    C + QN H+ I +A
Sbjct: 1121 CLYSFVSYYHSSYSARVEFASCQIIQNRHVTIDIA 1155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,801,672
Number of Sequences: 59808
Number of extensions: 184882
Number of successful extensions: 273
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)