Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_L02
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.9  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   7.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   7.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 433 ELAARIIIYRCFLTQNIHLQIVLASVTYKLISD 335
           E + +I  YRC     +  Q+V++SV    I+D
Sbjct: 199 EFSDQIHGYRCRTMHRLTRQVVVSSVANVRIAD 231


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 433 ELAARIIIYRCFLTQNIHLQIVLASVTYKLISD 335
           E + +I  YRC     +  Q+V++SV    I+D
Sbjct: 199 EFSDQIHGYRCRTMHRLTRQVVVSSVANVRIAD 231


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 410 IQVFLDAKYSFTNCFSICYIQINIR 336
           I V L+AKY  T  +   Y+Q  ++
Sbjct: 100 IWVLLEAKYDPTGAYKQHYLQNRVK 124


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 410 IQVFLDAKYSFTNCFSICYIQINIR 336
           I V L+AKY  T  +   Y+Q  ++
Sbjct: 100 IWVLLEAKYDPTGAYKQHYLQNRVK 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,989
Number of Sequences: 438
Number of extensions: 2121
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)