Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_K24
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    30   0.23 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   1.6  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   2.8  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   3.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   4.9  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   4.9  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    25   4.9  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   8.5  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       25   8.5  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 102 NRRCDIQWHFQCHSFNS*RKYS*LERRFWSPANHGDI 212
           N RCD ++HF  H  NS   Y+      + P +H  +
Sbjct: 352 NSRCDTKYHFLGHKCNSCHSYNTCISSIYKPLDHPQV 388


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -2

Query: 320 NVHSGNIKSNLFGYSIIS*QVLSCALP*PVGQPSPMNISVICGTPESPFKSTVFSLRVKT 141
           N +  +  SN   YS  + +  S +LP PV Q     I +    PE PF +         
Sbjct: 8   NFYDKSTPSNQNNYSNNNSRTPSYSLPAPVAQKKNAQIPLKASKPEDPFANLFQKKTDNK 67

Query: 140 VALK 129
           ++LK
Sbjct: 68  ISLK 71


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 312 FWKYKVESFWLLDYQLTGVILRSAITSWATIS 217
           F+  +   F +L YQ T ++  S + SWAT++
Sbjct: 216 FFDVEGNYFVVLAYQYTNMLSASLLDSWATVA 247


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = -1

Query: 300 KVESFWLLDYQLTGVILRSAITSWATISDEYLRDLRDSRISFQVNCIFFTS*NCGIESAI 121
           K+++ W   ++L G+ L     SW T+   +L D   S  S +++ + +      +E   
Sbjct: 18  KLKTMWSYLFKLFGITLLERTESWYTVK-THLSDDSSSSSSHRLSSVSYAKSRTRLELTS 76

Query: 120 EYHTFD 103
             H  D
Sbjct: 77  SSHGSD 82


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 375  FTDSFITFNYIVIIIV 422
            F+D FIT NY+V+I++
Sbjct: 1356 FSDPFITSNYLVMIVL 1371


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 207 DIHRRWLPNWLWQSAR*HLSADNRVTKKIRLYISRMYVWRI 329
           DI  +++PN+ W+ A+  L  +N ++   RL IS    WRI
Sbjct: 449 DISFKFMPNYPWEKAKDFLELENSLSIN-RLSIS----WRI 484


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 31  ALCVTVLLLINVSGIKCFN-VTSPSIEGVIFNGT--FNATVL 147
           A+C+  +L++ +  + CF  +  P + G   NGT  F +TV+
Sbjct: 36  AICILGILILAIVKLFCFKAIIFPIVGGSFNNGTNVFQSTVI 77


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 371 FRNKVSVKNLSRSFYSPNVHSGNIKSNL 288
           F N    K LSR   S ++ S N++SN+
Sbjct: 708 FNNHTGNKILSRQTTSSSIDSNNVQSNI 735


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 198 NHGDIHRRWLPNWLW 242
           N  +I ++WLPN  W
Sbjct: 142 NFSEIQKKWLPNMSW 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,096
Number of Sequences: 5004
Number of extensions: 35483
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)