Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_K24
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0008 + 8473198-8475523,8475618-8475967                           33   0.17 
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400...    30   0.92 
07_01_1123 - 10385215-10385574,10385676-10385810,10386385-103870...    30   0.92 
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110...    29   1.6  
07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331     28   3.7  
01_01_1198 - 9643469-9643585,9643740-9643805,9643905-9644489,964...    28   4.9  
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353...    27   8.6  

>04_02_0008 + 8473198-8475523,8475618-8475967
          Length = 891

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 154 KENTVDLKGDSGVPQITEIFIGDGCPTGYG-RAQDNTCQLII 276
           K N+V+LKG+ G+  +T IF    CPT    R ++NT  L+I
Sbjct: 500 KPNSVNLKGNKGLCALTSIFALPICPTSPAKRKKNNTRWLLI 541


>12_02_1042 +
           25638585-25638711,25639585-25639745,25639873-25640064,
           25640221-25640315,25640645-25640807,25640905-25641015,
           25641611-25642741,25642813-25642965,25643060-25643159,
           25643333-25643427,25643508-25643681,25643751-25643807,
           25643887-25643958,25644151-25644249,25644320-25644451,
           25644549-25644722,25644830-25644957,25645065-25645119
          Length = 1072

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -2

Query: 383 IRKRFRNKVSVKNLSRSFYSPNVHSGNIKSNLFG 282
           I +R +N  S  N+S+SF+ P ++  NI+ ++FG
Sbjct: 566 ILERNKNSWSDLNISKSFHLPPLNDENIRKSIFG 599


>07_01_1123 -
           10385215-10385574,10385676-10385810,10386385-10387091,
           10387158-10387455
          Length = 499

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 49  LLLINVSGIKCFNVTSPSIEGVIFNGTF 132
           LLL N  G +C  + SP+I GV F+  +
Sbjct: 236 LLLRNSYGFRCLRINSPTIRGVAFHSPY 263


>02_04_0038 -
           19110520-19110574,19110684-19110811,19110912-19111085,
           19111189-19111320,19111391-19111489,19111680-19111751,
           19111831-19111887,19111957-19112130,19112211-19112305,
           19112478-19112577,19112672-19112824,19112896-19114026,
           19114621-19114731,19114829-19114991,19115364-19115458,
           19115613-19115804,19115929-19116069
          Length = 1023

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 377 KRFRNKVSVKNLSRSFYSPNVHSGNIKSNLFG 282
           +R +N  S  N+S+SF+ P ++  NI+ ++FG
Sbjct: 519 ERNKNSWSDLNISKSFHLPPLNDENIRKSIFG 550


>07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331
          Length = 384

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 49  LLLINVSGIKCFNVTSPSIEGVIFNGTF 132
           LLL N  G +C  + SP+  GV F+  +
Sbjct: 220 LLLRNSYGFRCLRINSPTTRGVAFHSPY 247


>01_01_1198 -
           9643469-9643585,9643740-9643805,9643905-9644489,
           9645159-9645994,9646597-9646783,9647572-9647737,
           9648431-9648520,9649122-9649184,9649277-9649413,
           9649835-9650349,9651130-9651231,9651581-9651602
          Length = 961

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 204 GDIHRRWLPNWLWQ-SAR*HLSADNRV 281
           GD++RR L NW W+ ++  H SA + V
Sbjct: 842 GDVYRRHLENWTWRWTSHGHPSAPSAV 868


>10_01_0323 +
           3530246-3530446,3531091-3531726,3531860-3532018,
           3532276-3532569,3557747-3557941,3558875-3559095,
           3559190-3559373,3559797-3559973,3561319-3561824,
           3561880-3562060
          Length = 917

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 128 VPLNITPSIDGEVTLKHFIPDTLISNSTVTHNAYCRNIS 12
           +P +  P I  EV+ +H  PDT +    +       N+S
Sbjct: 434 IPTDSAPIISDEVSAQHSAPDTAVEPPAIEAGGVIGNVS 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,873,141
Number of Sequences: 37544
Number of extensions: 205046
Number of successful extensions: 515
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)