Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_K17
(857 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc... 205 7e-54
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 3.4
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 3.4
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.9
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 26 7.9
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 26 7.9
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 26 7.9
>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 205 bits (500), Expect = 7e-54
Identities = 108/247 (43%), Positives = 147/247 (59%), Gaps = 7/247 (2%)
Frame = +2
Query: 83 TVIAPVNIAVIKYWGKRDEKLILPLNDSVSATFDTSVMCAKTSVSTHPDFVEDQIWLNGK 262
TV APVNIAVIKYWGKRD L LP N S+S T + T+ S F D +WLNG
Sbjct: 9 TVSAPVNIAVIKYWGKRDVALNLPTNSSISVTLSQDDLRTVTTASCSEKFENDTLWLNGN 68
Query: 263 -EESFSNPRLQNCLREIKSRAV---AEKTIAEDVLSWKVHVSSENNFPTXXXXXXXXXXX 430
EE F+N RL+ C+ E++ + E + + + K+HV SENNFPT
Sbjct: 69 AEEIFANKRLRVCVEELRKARLDLEEENDDLDKIGALKLHVVSENNFPTAAGLASSAAGY 128
Query: 431 XCLVSALAKLYKIK---SDVSSIARLGSGSACRSVYGGFVRWHAGSKPDGSDSIATQIAD 601
A+A+LY + + +S IAR GSGSACRS++GG+V W G G+DS+A Q+
Sbjct: 129 AAFCEAIARLYDLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMGELHSGADSVAVQVEP 188
Query: 602 SNHWPEMRVLVLVVGNTQKKVSSTVGMKISSETSELLKHRIQHCVPQRTERIIXAIKNKD 781
+WPE+RV VLV +K VSST GM+ + +S L +HRIQ+ VPQR + + AI+ +D
Sbjct: 189 VENWPEIRVAVLVASAAKKGVSSTAGMQATVASSTLFQHRIQNIVPQRIQEMKTAIRERD 248
Query: 782 FYKFAEI 802
F FA++
Sbjct: 249 FETFAKL 255
Score = 35.1 bits (77), Expect = 0.013
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 802 TMKDSNQFHAICLXSYPP 855
TM DSNQFHA CL ++PP
Sbjct: 256 TMTDSNQFHACCLDTFPP 273
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 626 VLVLVVGNTQKKVSSTVG-MKISSETSELLKHRIQHCVPQRTERIIXAIKNKDFYKFAEI 802
V+ L++G ++V+S++ +KI+ S LL+H I + E I+ NKDF F +
Sbjct: 557 VMTLILGKNTREVNSSIEELKITDCLSFLLEHNIFNTFLVYNEGIVKL--NKDFDDFTPL 614
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 3.4
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +2
Query: 536 FVRWHAGSKPDGS-DSIATQIADSNHWPEMR-VLVLVVGNTQKKVSSTVGMKISSETSEL 709
F+ + SKP D+I + A+S P R VL+L VG+ KKV S V +L
Sbjct: 885 FLAYLYQSKPTSVLDTIIKRAAESGD-PNCRAVLILAVGHILKKVGSGVPQTTLITAYQL 943
Query: 710 LK 715
LK
Sbjct: 944 LK 945
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 2 GRPMSF*LIFAYFEQPFLFLLKMSNIVTVIAPVNIAVIKYWGKRDEKL 145
GR + + + A+++ + LLK N T PV + + YW D +L
Sbjct: 117 GRVVDWEALKAFWKHLYSLLLKDPNDTTFRYPVCLVIPTYWSLYDREL 164
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 316 TSCCRENDC*RCTIMESSCFFREQFSNRC 402
T C R N+ I+ +C F ++F++RC
Sbjct: 1704 TKCHRRNEKNEKEIIPDTCRFGDEFTHRC 1732
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 7.9
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Frame = +2
Query: 161 DSVSATFDT-SVMCAKTSVSTHPDFVEDQIWLNGKEESFSNPR------LQNCLREIKSR 319
DS SAT + +TS +P LN K F N R L N + ++ R
Sbjct: 143 DSASATLSQIQLSVERTSTRDYP--------LNSKNLKFRNFRKRLTGLLSNFVSQLSIR 194
Query: 320 A-VAEKTIAEDVLSWKVHVSSENNFP 394
+ T+ ED++SW V +SS P
Sbjct: 195 NYLYNSTVFEDIMSWVVAMSSSTMRP 220
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 759 IIRSVLWGTQCCIRCFNNSDVSEDIFIPTVELTFF 655
II S WGT C N+ DIF P V + +
Sbjct: 29 IIGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMY 63
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 608 DSNLQFVWL*NRY-HQVLSQHATLQNLRKHFYMHCLSLILQLN 483
D +L+F + +RY ++ +H TL++L+ FY ++L N
Sbjct: 116 DYDLRFFVIADRYDNEKYKKHRTLEDLKDRFYSVSRKILLARN 158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,421,476
Number of Sequences: 5004
Number of extensions: 70934
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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