Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_K17
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0071 - 496936-497158,497231-497352,497918-497966,498141-49... 238 4e-63
02_01_0057 + 420812-421556,422473-422597,422622-422912,423357-42... 218 4e-57
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 31 1.2
11_08_0033 + 27820563-27823482,27823593-27823996 29 6.3
>02_01_0071 -
496936-497158,497231-497352,497918-497966,498141-498211,
498368-498454,498660-498740,498838-498901,498994-499057,
499246-499444,499916-500134
Length = 392
Score = 238 bits (583), Expect = 4e-63
Identities = 124/247 (50%), Positives = 158/247 (63%), Gaps = 10/247 (4%)
Frame = +2
Query: 92 APVNIAVIKYWGKRDEKLILPLNDSVSATFDTSVMCAKTSVSTHPDFVEDQIWLNGKEES 271
+P NIAVIKYWGKRDE LILP+NDS+S T D + A T+V+ P F D++WLNGKE S
Sbjct: 17 SPTNIAVIKYWGKRDEALILPVNDSISVTLDPDHLSATTTVAVSPSFPSDRMWLNGKEIS 76
Query: 272 FSNPRLQNCLREIKSRAV----AEKTIAEDVLSW---KVHVSSENNFPTXXXXXXXXXXX 430
S R Q+CLREI+ RA +K I W VH++S NNFPT
Sbjct: 77 LSGGRFQSCLREIRKRAQDVEDEKKGIRIKKEDWGKLHVHIASFNNFPTAAGLASSAAGL 136
Query: 431 XCLVSALAKLYKIKSD---VSSIARLGSGSACRSVYGGFVRWHAGSKPDGSDSIATQIAD 601
C V L KL +K D +SSIAR GSGSACRS+YGGFV+W G DGSDSIA Q+AD
Sbjct: 137 ACFVFTLGKLMNVKEDHGELSSIARQGSGSACRSIYGGFVKWCMGKNNDGSDSIAVQLAD 196
Query: 602 SNHWPEMRVLVLVVGNTQKKVSSTVGMKISSETSELLKHRIQHCVPQRTERIIXAIKNKD 781
HW ++ +++ VV + QK+ SST GM+ S ETS LL++R Q VP+R ++ AIK+++
Sbjct: 197 EAHWNDLVIIIAVVSSKQKETSSTSGMRDSVETSPLLQYRAQTVVPERVLKMEEAIKSRN 256
Query: 782 FYKFAEI 802
F FA I
Sbjct: 257 FESFARI 263
>02_01_0057 +
420812-421556,422473-422597,422622-422912,423357-423555,
423737-423800,423894-423957,424055-424135,424334-424420,
424492-424500
Length = 554
Score = 218 bits (533), Expect = 4e-57
Identities = 113/222 (50%), Positives = 141/222 (63%), Gaps = 10/222 (4%)
Frame = +2
Query: 92 APVNIAVIKYWGKRDEKLILPLNDSVSATFDTSVMCAKTSVSTHPDFVEDQIWLNGKEES 271
+P NIAVIKYWGKRDE LILP+NDS+S T D + A T+V+ P F D++WLNGKE S
Sbjct: 331 SPTNIAVIKYWGKRDEALILPVNDSISVTLDPDHLSATTTVAVSPSFPSDRMWLNGKEIS 390
Query: 272 FSNPRLQNCLREIKSRAV----AEKTIAEDVLSW---KVHVSSENNFPTXXXXXXXXXXX 430
S R Q+CLREI+ RA +K I W VH++S NNFPT
Sbjct: 391 LSGGRFQSCLREIRKRAQDVEDEKKGIRIKKEDWGKLHVHIASYNNFPTAAGLASSVAGL 450
Query: 431 XCLVSALAKLYKIKSD---VSSIARLGSGSACRSVYGGFVRWHAGSKPDGSDSIATQIAD 601
C V L L +K D +SSIAR GSGSACRS+YGGFV+W G DGSDSIA Q+AD
Sbjct: 451 VCFVFTLGNLMNVKEDYGELSSIARQGSGSACRSIYGGFVKWCMGKNNDGSDSIAVQLAD 510
Query: 602 SNHWPEMRVLVLVVGNTQKKVSSTVGMKISSETSELLKHRIQ 727
HW ++ +++ VV + QK+ SST GM+ S ETS LL++R Q
Sbjct: 511 EAHWNDLVIIIAVVSSKQKETSSTSGMRDSVETSPLLQYRAQ 552
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -2
Query: 838 SKLHETDYCLSLYLCKFIKVFVLYSXYNSFSSLGNTVLYSV 716
S LH+TDY + LYL + K+ VL+ + S L + V S+
Sbjct: 912 SMLHDTDYRVRLYLAR--KIVVLFQIWEGHSELFHDVCSSI 950
>11_08_0033 + 27820563-27823482,27823593-27823996
Length = 1107
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 419 PRMLNQQRLENCSLKKHELSMIVHLQQSFSLQQL 318
P + N RLE S++K+ L+ + +SF+L L
Sbjct: 245 PAIFNMSRLETISIRKNNLTGAIPTNESFNLPML 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,214,310
Number of Sequences: 37544
Number of extensions: 398286
Number of successful extensions: 911
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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