Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_K17
(857 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49260-1|AAC50440.1| 400|Homo sapiens mevalonate pyrophosphate ... 253 5e-67
BT006930-1|AAP35576.1| 400|Homo sapiens mevalonate (diphospho) ... 253 5e-67
BC000011-1|AAH00011.1| 400|Homo sapiens mevalonate (diphospho) ... 253 5e-67
AB209229-1|BAD92466.1| 232|Homo sapiens diphosphomevalonate dec... 187 4e-47
BC036816-1|AAH36816.1| 588|Homo sapiens thioredoxin domain cont... 33 1.8
AF333072-2|AAL60056.1| 702|Homo sapiens pol protein protein. 31 5.4
AY292265-1|AAP84255.1| 102|Homo sapiens T-cell receptor beta ch... 31 7.1
>U49260-1|AAC50440.1| 400|Homo sapiens mevalonate pyrophosphate
decarboxylase protein.
Length = 400
Score = 253 bits (620), Expect = 5e-67
Identities = 123/246 (50%), Positives = 156/246 (63%), Gaps = 5/246 (2%)
Frame = +2
Query: 80 VTVIAPVNIAVIKYWGKRDEKLILPLNDSVSATFDTSVMCAKTSVSTHPDFVEDQIWLNG 259
VT APVNIAVIKYWGKRDE+L+LP+N S+S T + T+ DF ED+IWLNG
Sbjct: 10 VTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDFTEDRIWLNG 69
Query: 260 KEESFSNPRLQNCLREIKSRAVAEKTIAE-----DVLSWKVHVSSENNFPTXXXXXXXXX 424
+EE PRLQ CLREI+ A + + LS KVHV+S NNFPT
Sbjct: 70 REEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSSLSCKVHVASVNNFPTAAGLASSAA 129
Query: 425 XXXCLVSALAKLYKIKSDVSSIARLGSGSACRSVYGGFVRWHAGSKPDGSDSIATQIADS 604
CL LA++Y ++SD+S +AR GSGSACRS+YGGFV W G + DG DSIA Q+A
Sbjct: 130 GYACLAYTLARVYGVESDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQVAPE 189
Query: 605 NHWPEMRVLVLVVGNTQKKVSSTVGMKISSETSELLKHRIQHCVPQRTERIIXAIKNKDF 784
+HWPE+RVL+LVV +K STVGM+ S ETS LL+ R + VP R + I+ +DF
Sbjct: 190 SHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPARMAEMARCIRERDF 249
Query: 785 YKFAEI 802
FA++
Sbjct: 250 PSFAQL 255
Score = 37.5 bits (83), Expect = 0.062
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 802 TMKDSNQFHAICLXSYPP 855
TMKDSNQFHA CL ++PP
Sbjct: 256 TMKDSNQFHATCLDTFPP 273
>BT006930-1|AAP35576.1| 400|Homo sapiens mevalonate (diphospho)
decarboxylase protein.
Length = 400
Score = 253 bits (620), Expect = 5e-67
Identities = 123/246 (50%), Positives = 156/246 (63%), Gaps = 5/246 (2%)
Frame = +2
Query: 80 VTVIAPVNIAVIKYWGKRDEKLILPLNDSVSATFDTSVMCAKTSVSTHPDFVEDQIWLNG 259
VT APVNIAVIKYWGKRDE+L+LP+N S+S T + T+ DF ED+IWLNG
Sbjct: 10 VTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDFTEDRIWLNG 69
Query: 260 KEESFSNPRLQNCLREIKSRAVAEKTIAE-----DVLSWKVHVSSENNFPTXXXXXXXXX 424
+EE PRLQ CLREI+ A + + LS KVHV+S NNFPT
Sbjct: 70 REEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSSLSCKVHVASVNNFPTAAGLASSAA 129
Query: 425 XXXCLVSALAKLYKIKSDVSSIARLGSGSACRSVYGGFVRWHAGSKPDGSDSIATQIADS 604
CL LA++Y ++SD+S +AR GSGSACRS+YGGFV W G + DG DSIA Q+A
Sbjct: 130 GYACLAYTLARVYGVESDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQVAPE 189
Query: 605 NHWPEMRVLVLVVGNTQKKVSSTVGMKISSETSELLKHRIQHCVPQRTERIIXAIKNKDF 784
+HWPE+RVL+LVV +K STVGM+ S ETS LL+ R + VP R + I+ +DF
Sbjct: 190 SHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPARMAEMARCIRERDF 249
Query: 785 YKFAEI 802
FA++
Sbjct: 250 PSFAQL 255
Score = 37.5 bits (83), Expect = 0.062
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 802 TMKDSNQFHAICLXSYPP 855
TMKDSNQFHA CL ++PP
Sbjct: 256 TMKDSNQFHATCLDTFPP 273
>BC000011-1|AAH00011.1| 400|Homo sapiens mevalonate (diphospho)
decarboxylase protein.
Length = 400
Score = 253 bits (620), Expect = 5e-67
Identities = 123/246 (50%), Positives = 156/246 (63%), Gaps = 5/246 (2%)
Frame = +2
Query: 80 VTVIAPVNIAVIKYWGKRDEKLILPLNDSVSATFDTSVMCAKTSVSTHPDFVEDQIWLNG 259
VT APVNIAVIKYWGKRDE+L+LP+N S+S T + T+ DF ED+IWLNG
Sbjct: 10 VTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDFTEDRIWLNG 69
Query: 260 KEESFSNPRLQNCLREIKSRAVAEKTIAE-----DVLSWKVHVSSENNFPTXXXXXXXXX 424
+EE PRLQ CLREI+ A + + LS KVHV+S NNFPT
Sbjct: 70 REEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSSLSCKVHVASVNNFPTAAGLASSAA 129
Query: 425 XXXCLVSALAKLYKIKSDVSSIARLGSGSACRSVYGGFVRWHAGSKPDGSDSIATQIADS 604
CL LA++Y ++SD+S +AR GSGSACRS+YGGFV W G + DG DSIA Q+A
Sbjct: 130 GYACLAYTLARVYGVESDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQVAPE 189
Query: 605 NHWPEMRVLVLVVGNTQKKVSSTVGMKISSETSELLKHRIQHCVPQRTERIIXAIKNKDF 784
+HWPE+RVL+LVV +K STVGM+ S ETS LL+ R + VP R + I+ +DF
Sbjct: 190 SHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPARMAEMARCIRERDF 249
Query: 785 YKFAEI 802
FA++
Sbjct: 250 PSFAQL 255
Score = 37.5 bits (83), Expect = 0.062
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +1
Query: 802 TMKDSNQFHAICLXSYPP 855
TMKDSNQFHA CL ++PP
Sbjct: 256 TMKDSNQFHATCLDTFPP 273
>AB209229-1|BAD92466.1| 232|Homo sapiens diphosphomevalonate
decarboxylase variant protein.
Length = 232
Score = 187 bits (456), Expect = 4e-47
Identities = 89/178 (50%), Positives = 113/178 (63%), Gaps = 5/178 (2%)
Frame = +2
Query: 125 GKRDEKLILPLNDSVSATFDTSVMCAKTSVSTHPDFVEDQIWLNGKEESFSNPRLQNCLR 304
GKRDE+L+LP+N S+S T + T+ DF ED+IWLNG+EE PRLQ CLR
Sbjct: 40 GKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDFTEDRIWLNGREEDVGQPRLQACLR 99
Query: 305 EIKSRAVAEKTIAE-----DVLSWKVHVSSENNFPTXXXXXXXXXXXXCLVSALAKLYKI 469
EI+ A + + LS KVHV+S NNFPT CL LA++Y +
Sbjct: 100 EIRCLARKRRNSRDGDPLPSSLSCKVHVASVNNFPTAAGLASSAAGYACLAYTLARVYGV 159
Query: 470 KSDVSSIARLGSGSACRSVYGGFVRWHAGSKPDGSDSIATQIADSNHWPEMRVLVLVV 643
+SD+S +AR GSGSACRS+YGGFV W G + DG DSIA Q+A +HWPE+RVL+LVV
Sbjct: 160 ESDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQVAPESHWPELRVLILVV 217
>BC036816-1|AAH36816.1| 588|Homo sapiens thioredoxin domain
containing 3 (spermatozoa) protein.
Length = 588
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +2
Query: 569 GSDSIATQIADSNHW-PEMRVLVLVVGNTQKKVSSTVGMKISSETS-ELLKHRIQHCVPQ 742
GSDS+ T + H+ P L L+ + + + +KI E +L + + P+
Sbjct: 433 GSDSLETAEREIQHFFPLQSTLGLIKPHATSEQREQI-LKIVKEAGFDLTQVKKMFLTPE 491
Query: 743 RTERIIXAIKNKDFYK 790
+TE+I + KDFYK
Sbjct: 492 QTEKIYPKVTGKDFYK 507
>AF333072-2|AAL60056.1| 702|Homo sapiens pol protein protein.
Length = 702
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 56 FLLKMSNIVTVIAPVNIAVIKYWGKRDEKLILPL 157
F L + I T+I P + +IK G +K+++PL
Sbjct: 262 FTLYLDQIATLIGPTRLRIIKLCGNDPDKIVVPL 295
>AY292265-1|AAP84255.1| 102|Homo sapiens T-cell receptor beta chain
TCRBV7.2J7 variable region protein.
Length = 102
Score = 30.7 bits (66), Expect = 7.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 152 PLNDSVSATFDTSVMCAKTSVSTHPDFVEDQIWLNGKE 265
P +S T +++C T +PD VE +W+NGKE
Sbjct: 65 PSEAEISHTQKATLVCLATGF--YPDHVELSVWVNGKE 100
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,288,079
Number of Sequences: 237096
Number of extensions: 2254119
Number of successful extensions: 4880
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4876
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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