Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_K15
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    28   1.3  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    26   5.4  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    26   7.1  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   7.1  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    26   7.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.4  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    25   9.4  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    25   9.4  

>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 506 AIHTNMVALNPRLSVTYNNHNTWKLRVSNV 595
           +IHTNM   NP L  T N+ NT   +++++
Sbjct: 170 SIHTNMWKKNPELISTLNSTNTMVAKINSL 199


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 548 VTYNNHNTWKLRVSNVQPNDSGTYMCQVNTDPMKSQMGHLSVVIPPDI 691
           + + N     L    + P +   +M   N  PM +Q+G LS+ IP ++
Sbjct: 134 IKHPNETAQSLTFREIAPGNVSKHMFDKN--PMLAQVGPLSIAIPGEL 179


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 375 SPNSCKPWRTTL*LWDATC 431
           S +  K W TT+ LWD TC
Sbjct: 58  SLHGTKDWVTTVYLWDPTC 76


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 619 HVSSQHRSNEKSDGSLICSDPTGYSRFGN*RXFGSXRRQYXVNVYGHR 762
           H S+Q RS E+SD     SD   +SR        + R +   + Y HR
Sbjct: 177 HRSNQDRSRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHNDRYRHR 224


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 249 KIILIETQHNHKSRKTLKWQLRKL 178
           +I+ + ++HNH SR T K  +++L
Sbjct: 438 EILSVSSRHNHNSRDTRKMTIQQL 461


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = -3

Query: 432  CTSRPRVTVWFS--RACRNSGSASVCVGISAVTN 337
            C SR  +  W S  RAC NS   S CV +   TN
Sbjct: 2559 CDSRFSLMEWRSQCRACGNSNVCSDCVSMLKDTN 2592


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = +2

Query: 608 SGTYMCQVNTDPMKSQMGHLSVVIPPDIVDSATEGXSAQXGGSIXLTCTATGLP 769
           +G Y   VN D +    GH S V P ++     +G   Q   +  +     G P
Sbjct: 100 NGIYERNVNKDGVAYISGHASFVSPTEVAVDMNDGSGTQVFSAKYILIAVGGHP 153


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 86  PALVSSTCAQTVIFNLTVMYHETLCLGDTELSL 184
           P L+ S C  T   +  +M HE  CL      L
Sbjct: 173 PNLICSKCNTTFNHSTALMMHEATCLNQVPFKL 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,427,646
Number of Sequences: 5004
Number of extensions: 70240
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)