Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_K13
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 261 9e-71
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 261 9e-71
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 178 6e-46
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 93 3e-20
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 87 3e-18
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 75 9e-15
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 75 9e-15
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 39 0.001
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 29 0.58
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 29 0.58
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 29 0.58
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 29 0.58
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 29 0.77
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 28 1.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.8
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 2.4
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 27 3.1
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 5.4
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl... 26 7.2
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.5
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 261 bits (639), Expect = 9e-71
Identities = 133/232 (57%), Positives = 165/232 (71%), Gaps = 1/232 (0%)
Frame = +3
Query: 105 LRGLXDXQRNIRNMSVXAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 284
+R L N+RNMSV AHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR DEQ+R +
Sbjct: 9 VRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGV 68
Query: 285 TIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTD 461
TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTD
Sbjct: 69 TIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTD 123
Query: 462 GALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVE 641
GAL QTETVLRQA+ ERI+P++ +NK+DR YQ F R+VE
Sbjct: 124 GALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVE 183
Query: 642 NVNVIIATYNDDGGPMGEVRVDPXKGSVGFGSGLHGWAFTLKQFSXMYADKF 797
+VNV+I+TY D +G+ +V P KG+V F SGLHGWAFT++QF+ YA KF
Sbjct: 184 SVNVVISTYYDK--VLGDCQVFPDKGTVAFASGLHGWAFTVRQFANRYAKKF 233
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 261 bits (639), Expect = 9e-71
Identities = 133/232 (57%), Positives = 165/232 (71%), Gaps = 1/232 (0%)
Frame = +3
Query: 105 LRGLXDXQRNIRNMSVXAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCI 284
+R L N+RNMSV AHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR DEQ+R +
Sbjct: 9 VRNLMGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGV 68
Query: 285 TIKSTAISMFFELEEKDLVFITNPDQREKSE-KGFLINLIDSPGHVDFSSEVTAALRVTD 461
TIKSTAIS+F E+ + D+ D +E ++ FL+NLIDSPGHVDFSSEVTAALRVTD
Sbjct: 69 TIKSTAISLFAEMTDDDM-----KDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTD 123
Query: 462 GALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVE 641
GAL QTETVLRQA+ ERI+P++ +NK+DR YQ F R+VE
Sbjct: 124 GALVVVDTIEGVCVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVE 183
Query: 642 NVNVIIATYNDDGGPMGEVRVDPXKGSVGFGSGLHGWAFTLKQFSXMYADKF 797
+VNV+I+TY D +G+ +V P KG+V F SGLHGWAFT++QF+ YA KF
Sbjct: 184 SVNVVISTYYDK--VLGDCQVFPDKGTVAFASGLHGWAFTVRQFANRYAKKF 233
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 178 bits (434), Expect = 6e-46
Identities = 108/241 (44%), Positives = 139/241 (57%), Gaps = 10/241 (4%)
Frame = +3
Query: 102 RLRGLXDXQRNIRNMSVXAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRC 281
+L L Q NIRN ++ AHVDHGK+TL DSL++ GII+ AG RF D R+DE R
Sbjct: 8 KLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG 67
Query: 282 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 461
IT+KS+AIS+FF++ I+ D++ + EK +LINLIDSPGHVDFSSEV++A R+ D
Sbjct: 68 ITMKSSAISLFFKV-------ISQNDEK-RVEKDYLINLIDSPGHVDFSSEVSSASRLCD 119
Query: 462 GALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVE 641
GA QT TVLRQA +RIK IL +NKMDR + R+VE
Sbjct: 120 GAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHLLRLVE 179
Query: 642 NVNVIIATY----------NDDGGPMGEVRVDPXKGSVGFGSGLHGWAFTLKQFSXMYAD 791
VN +I T+ ND+ + P +G+V F S GWAF L QFS Y
Sbjct: 180 QVNAVIGTFYTGELMQLADNDEVISDEGIYFAPEQGNVVFASAYDGWAFCLDQFSEFYEK 239
Query: 792 K 794
K
Sbjct: 240 K 240
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 93.5 bits (222), Expect = 3e-20
Identities = 67/231 (29%), Positives = 105/231 (45%), Gaps = 1/231 (0%)
Frame = +3
Query: 105 LRGLXDXQRNIRNMSVXAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRC 281
L GL ++R+ V H+ HGKS L D LV + R+TDT E++R
Sbjct: 130 LFGLLTGTDDVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERV 189
Query: 282 ITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTD 461
++IKST +++ D + K+ F ID+PGHVDF EV A + ++D
Sbjct: 190 MSIKSTPLTLAVS------------DMKGKT---FAFQCIDTPGHVDFVDEVAAPMAISD 234
Query: 462 GALXXXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTFQRIVE 641
G + T +++ AI + +L +NK+DR Y + +++
Sbjct: 235 GVVLVVDVIEGVMINTTRIIKHAILHDMPIVLVLNKVDRLILELRLPPNDAYHKLRHVID 294
Query: 642 NVNVIIATYNDDGGPMGEVRVDPXKGSVGFGSGLHGWAFTLKQFSXMYADK 794
VN I + D + RV P G+V F S G+ FTL F+ +Y D+
Sbjct: 295 EVNDNICQISKD----LKYRVSPELGNVCFASCDLGYCFTLSSFAKLYIDR 341
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 87.0 bits (206), Expect = 3e-18
Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 5/155 (3%)
Frame = +3
Query: 129 RNIRNMSVXAHVDHGKSTLTDSLVSKAGIIAGARA--GETRF---TDTRKDEQDRCITIK 293
+ IRN+ + AH+D GK+T T+ ++ G I G+ D + E+++ ITI+
Sbjct: 57 KQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQ 116
Query: 294 STAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALX 473
S A +E + N Q+ EK + IN+ID+PGH+DF+ EV ALRV DGA+
Sbjct: 117 SAATHCTWERTVDQIE--ANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVL 174
Query: 474 XXXXXXXXXXQTETVLRQAIAERIKPILFMNKMDR 578
QT TV RQ + I F+NKMDR
Sbjct: 175 VLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDR 209
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 75.4 bits (177), Expect = 9e-15
Identities = 50/167 (29%), Positives = 77/167 (46%)
Frame = +3
Query: 126 QRNIRNMSVXAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAI 305
Q +RN +V AH+DHGKSTL+D ++ G+I +F D + E+ R IT+K+
Sbjct: 55 QNRVRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGITVKAQTC 113
Query: 306 SMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXX 485
SM + + +L+NLID+PGHVDF +EV +L +G +
Sbjct: 114 SMIYYYH----------------GQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDA 157
Query: 486 XXXXXXQTETVLRQAIAERIKPILFMNKMDRXXXXXXXXXXXXYQTF 626
QT + A ++ + I +NK+D QTF
Sbjct: 158 SQGIQAQTLSNFYMAFSQNLVIIPVLNKVDLPTADVDRTLIQVQQTF 204
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 75.4 bits (177), Expect = 9e-15
Identities = 54/151 (35%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Frame = +3
Query: 132 NIRNMSVXAHVDHGKSTLTDSLVSKAGIIAGARAGETRFT--DTRKDEQDRCITIKSTAI 305
+IRN+ + AH+D GK+TLT+ ++ G + +T T D E+ R ITI S AI
Sbjct: 27 SIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDTVMDYLPAERQRGITINSAAI 86
Query: 306 SMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXX 485
S + +QR INLID+PGH DF+ EV ++ V DGA+
Sbjct: 87 SFTWR------------NQR--------INLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 486 XXXXXXQTETVLRQAIAERIKPILFMNKMDR 578
QT+ V +QA I ++F+NKMDR
Sbjct: 127 SAGVEAQTKVVWKQATKRGIPKVIFVNKMDR 157
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 38.7 bits (86), Expect = 0.001
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 1/146 (0%)
Frame = +3
Query: 141 NMSVXAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 320
N+ HVDHGK+TLT ++ + A + D +E+ R ITI S + +E
Sbjct: 55 NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISSAHVE--YE 112
Query: 321 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 500
+ +D PGH D+ + DGA+
Sbjct: 113 TANRHYAH------------------VDCPGHADYIKNMITGAATMDGAIIVVSATDGQM 154
Query: 501 XQTETVLRQAIAERIKPI-LFMNKMD 575
QT L A +K I +++NK+D
Sbjct: 155 PQTREHLLLARQVGVKQIVVYINKVD 180
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 141 NMSVXAHVDHGKSTLTDSLVSKAG 212
N+ V HVD GKST T L+ K G
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCG 32
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.5 bits (63), Expect = 0.58
Identities = 26/120 (21%), Positives = 53/120 (44%)
Frame = +3
Query: 84 CISRYPRLRGLXDXQRNIRNMSVXAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 263
CI + ++R + + I + K+ +T L S+ ++A A R+ D +
Sbjct: 434 CIDEFDKMRD--EDRVAIHEAMEQQTISIAKAGITTILNSRTSVLAAANPIFGRYDDMKT 491
Query: 264 DEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTA 443
++ I +ST +S F D++FI + E ++ ++I+ ++ SSE A
Sbjct: 492 PGEN--IDFQSTILSRF------DMIFIVKDEHDETKDRNIARHVINLHTNLQESSETLA 543
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 141 NMSVXAHVDHGKSTLTDSLVSKAG 212
N+ V HVD GKST T L+ K G
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 141 NMSVXAHVDHGKSTLTDSLVSKAG 212
N+ V HVD GKST T L+ K G
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 29.1 bits (62), Expect = 0.77
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 144 MSVXAHVDHGKSTLTDSLVSKAGIIAGARAGETR----FTDTRKDEQDRCITIKSTAISM 311
+++ HVDHGK+TL D+ K+ I + G T+ FT D+ + IT T M
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQKIGAFT-VPFDKGSKFITFLDTPGHM 231
Query: 312 FFELEEK 332
FE K
Sbjct: 232 AFEAMRK 238
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = -1
Query: 517 TVSVCTHTPD-TQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 341
T + C+ P+ T ST + +V+ S + ++ ST P ++ + S S V +
Sbjct: 575 TTTTCSSRPEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLS-----SSSVHS 629
Query: 340 TKSFSSSSKNIEMAV 296
+ + SSSS++ M++
Sbjct: 630 SSAHSSSSRSSSMSL 644
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.9 bits (59), Expect = 1.8
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -1
Query: 520 STVSVCTHTPDTQSTT-TRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 344
+T S + +P + STT T +PS + S++ +S S+ S S S S
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 343 NTKSFSSSSKNIEMAV 296
++ S SSSS + + +
Sbjct: 195 SSSSSSSSSSSSSVPI 210
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -1
Query: 523 RSTVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVM 344
++TVS + + T S+++ +PS + + TS S+ S S S S
Sbjct: 124 QTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSS 183
Query: 343 NTKSFSSSSKN 311
++ S SSSS +
Sbjct: 184 SSSSSSSSSSS 194
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 2 GRPMKASAIAGVWSLVXSHKNHKPSKMV 85
GR +A W+LV SH+ H SK+V
Sbjct: 526 GRTARAGREGFAWTLVQSHEGHHFSKLV 553
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 430 EEKSTCPGESIKLIKKPFSLFSRWSGFVMNTKSFSS-SSKNIEMAVDLMVMQRSCSSLRV 254
EE + P + K KK S F+ T +S S++NI+ A+DL+ + S S ++
Sbjct: 66 EEMESLPSKGGKGSKKAAKKNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDKI 125
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 5.4
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Frame = +3
Query: 141 NMSVXAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISMFFE 320
N+ HVD GKSTL +++ G++ R E + E + S A+ E
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV-DKRTMEK--IEREAKEAGKESWYLSWALDSTSE 296
Query: 321 LEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDF-SSEVTAALRVTDGAL 470
EK E + F +L+D+PGH + ++ + A + G L
Sbjct: 297 EREKGKTVEVGRAYFETEHRRF--SLLDAPGHKGYVTNMINGASQADIGVL 345
>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
endonuclease Cce1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 382 PFSLFSRWSGFVMNTK-SFSSSSKNIEMAVDLMVMQR 275
P S +S W+ V+NTK SFS ++M +L+ Q+
Sbjct: 168 PKSTYSYWAS-VLNTKASFSKKKSRVQMVKELIDGQK 203
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -1
Query: 520 STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 341
S+ S T TP + STT+ + S + S ++S S+ + + S S S +
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS-SASSSGSISSAD 198
Query: 340 TKSFSSSSKN 311
K+ S+SS +
Sbjct: 199 AKTVSASSNS 208
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 166 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 273
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,248,427
Number of Sequences: 5004
Number of extensions: 64763
Number of successful extensions: 228
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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