Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_K12
(866 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VEN6 Cluster: CG5184-PA, isoform A; n=7; Endopterygot... 115 1e-24
UniRef50_UPI00015B62C0 Cluster: PREDICTED: similar to CG5184-PA;... 99 2e-19
UniRef50_Q8SXD7 Cluster: RH70248p; n=2; Drosophila melanogaster|... 83 9e-15
UniRef50_UPI00003C036B Cluster: PREDICTED: similar to mitochondr... 77 4e-13
UniRef50_UPI0000586F02 Cluster: PREDICTED: hypothetical protein ... 70 7e-11
UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whol... 64 6e-09
UniRef50_Q23155 Cluster: Putative uncharacterized protein; n=2; ... 60 7e-08
UniRef50_P82912 Cluster: 28S ribosomal protein S11, mitochondria... 56 1e-06
UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular or... 44 0.007
UniRef50_Q5DCW6 Cluster: SJCHGC02467 protein; n=1; Schistosoma j... 43 0.009
UniRef50_A2QQ89 Cluster: Contig An08c0050, complete genome; n=6;... 40 0.062
UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=... 40 0.082
UniRef50_P27419 Cluster: Chloroplast 30S ribosomal protein S11; ... 40 0.11
UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellu... 38 0.25
UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellu... 38 0.25
UniRef50_Q9TCB8 Cluster: Ribosomal protein S11; n=1; Nephroselmi... 38 0.44
UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33; Bacter... 38 0.44
UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15; Bacter... 37 0.58
UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis... 36 1.0
UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11; ... 36 1.0
UniRef50_A6BM57 Cluster: Ribosomal protein S11; n=1; Gnetum parv... 36 1.3
UniRef50_Q9TLV1 Cluster: Chloroplast 30S ribosomal protein S11; ... 36 1.8
UniRef50_Q5A3W6 Cluster: Potential spliceosomal U4/U6 snRNP prot... 35 3.1
UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellul... 34 4.1
UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;... 34 4.1
UniRef50_Q6SGQ1 Cluster: Putative uncharacterized protein; n=1; ... 34 5.4
UniRef50_Q7R835 Cluster: Putative uncharacterized protein PY0738... 33 7.1
UniRef50_Q9PQN5 Cluster: 30S ribosomal protein S11; n=1; Ureapla... 33 7.1
UniRef50_Q49081 Cluster: 30S ribosomal protein; n=1; Mycoplasma ... 33 9.4
UniRef50_Q3E673 Cluster: Glycosyl transferase, family 2; n=3; Ch... 33 9.4
UniRef50_Q9G885 Cluster: Ribosomal protein S11; n=1; Malawimonas... 33 9.4
UniRef50_Q05FK3 Cluster: 30S ribosomal protein S11; n=2; cellula... 33 9.4
UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellu... 33 9.4
>UniRef50_Q9VEN6 Cluster: CG5184-PA, isoform A; n=7;
Endopterygota|Rep: CG5184-PA, isoform A - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 115 bits (277), Expect = 1e-24
Identities = 65/173 (37%), Positives = 89/173 (51%), Gaps = 3/173 (1%)
Frame = +3
Query: 51 VKFKMISALRNSVRASVTSVVRLFQTST---PQATEKFVHKRIPAPDEGVQGEKIIDLDS 221
+K +SALR+ +V TS K + +PA DEG GEK +D+D+
Sbjct: 3 LKSVFLSALRSITMPAVPLQTSRIHTSACWRKAEDRKEMLASLPAKDEGTVGEKTVDIDT 62
Query: 222 ALKTKQNLFPTLESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEG 401
+ K FP + L+NGIP+ +LPICNIRVS NNTI ++T+ G +R+IRSCG+EG
Sbjct: 63 LINRKAKFFPDASTANTLFNGIPFNELPICNIRVSPNNTIISVTDHKGVLRLIRSCGIEG 122
Query: 402 FKNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGG 560
FKNT+KG KA+ G K LG + + L GG
Sbjct: 123 FKNTRKGTNIAAQATAVTISGKAIELGWKTVRVKVRGLGPGRMSAIKGLQMGG 175
Score = 83.0 bits (196), Expect = 9e-15
Identities = 36/43 (83%), Positives = 42/43 (97%)
Frame = +1
Query: 484 YNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPP 612
+ TVRV+V+GLGPGR+SA+KGLQMGGLNIVSITDNTHVS+NPP
Sbjct: 150 WKTVRVKVRGLGPGRMSAIKGLQMGGLNIVSITDNTHVSFNPP 192
>UniRef50_UPI00015B62C0 Cluster: PREDICTED: similar to CG5184-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
CG5184-PA - Nasonia vitripennis
Length = 212
Score = 98.7 bits (235), Expect = 2e-19
Identities = 50/131 (38%), Positives = 73/131 (55%)
Frame = +3
Query: 168 IPAPDEGVQGEKIIDLDSALKTKQNLFPTLESDYQLYNGIPYKDLPICNIRVSHNNTIFT 347
+P DEG GEK +D+D L +++LFP + +L++GIPYK+LPI NI+V+ NNTI T
Sbjct: 58 MPGKDEGTAGEKSVDIDG-LGVQEDLFPDENTPNRLFDGIPYKELPIFNIKVTPNNTIIT 116
Query: 348 LTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRA 527
LT+ G V I++SCG EGF+ +KG KA G+ + +G
Sbjct: 117 LTDFKGGVHILKSCGTEGFRTARKGTNIAAQTTAISISTKAQSIGVRTARVRIRGIGPGR 176
Query: 528 IVCSQRLTNGG 560
+ + L GG
Sbjct: 177 LAAIKGLQMGG 187
Score = 78.6 bits (185), Expect = 2e-13
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = +1
Query: 490 TVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPP 612
T RVR++G+GPGRL+A+KGLQMGG NIVSITDNTHVSW PP
Sbjct: 164 TARVRIRGIGPGRLAAIKGLQMGGTNIVSITDNTHVSWCPP 204
>UniRef50_Q8SXD7 Cluster: RH70248p; n=2; Drosophila
melanogaster|Rep: RH70248p - Drosophila melanogaster
(Fruit fly)
Length = 178
Score = 83.0 bits (196), Expect = 9e-15
Identities = 36/43 (83%), Positives = 42/43 (97%)
Frame = +1
Query: 484 YNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPP 612
+ TVRV+V+GLGPGR+SA+KGLQMGGLNIVSITDNTHVS+NPP
Sbjct: 128 WKTVRVKVRGLGPGRMSAIKGLQMGGLNIVSITDNTHVSFNPP 170
Score = 76.2 bits (179), Expect = 1e-12
Identities = 57/173 (32%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
Frame = +3
Query: 51 VKFKMISALRNSVRASVTSVVRLFQTST---PQATEKFVHKRIPAPDEGVQGEKIIDLDS 221
+K +SALR+ +V TS K + +PA DEG GEK +D+D+
Sbjct: 3 LKSVFLSALRSITMPAVPLQTSRIHTSACWRKAEDRKEMLAFLPAKDEGTVGEKTVDIDT 62
Query: 222 ALKTKQNLFPTLESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEG 401
+ +LPICNIRVS NNTI ++T+ G +R+IRSCG+EG
Sbjct: 63 LIN----------------------ELPICNIRVSPNNTIISVTDHKGVLRLIRSCGIEG 100
Query: 402 FKNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGG 560
FKNT+KG KA+ G K LG + + L GG
Sbjct: 101 FKNTRKGTNIAAQATAVTISGKAIELGWKTVRVKVRGLGPGRMSAIKGLQMGG 153
>UniRef50_UPI00003C036B Cluster: PREDICTED: similar to mitochondrial
ribosomal protein S11 CG5184-PA, isoform A; n=1; Apis
mellifera|Rep: PREDICTED: similar to mitochondrial
ribosomal protein S11 CG5184-PA, isoform A - Apis
mellifera
Length = 196
Score = 77.4 bits (182), Expect = 4e-13
Identities = 40/99 (40%), Positives = 57/99 (57%)
Frame = +3
Query: 189 VQGEKIIDLDSALKTKQNLFPTLESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGK 368
++GEK ID +K+K +LFP + YQ ++G+ Y L + NI+ SHNNTI +LT+ G
Sbjct: 50 MEGEKAIDFID-VKSK-SLFPDASTLYQFFDGVQYTQLHVINIKSSHNNTIMSLTDFKGS 107
Query: 369 VRIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQGI 485
I+ S G+EGFKNTKKG + + GI
Sbjct: 108 GIILHSAGLEGFKNTKKGTNIAAQQAAITFGTRVLNHGI 146
Score = 70.9 bits (166), Expect = 4e-11
Identities = 29/41 (70%), Positives = 37/41 (90%)
Frame = +1
Query: 490 TVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPP 612
TV++R+QG+GPGR+ A+KGLQ+ LNIVSITD+T VSWNPP
Sbjct: 148 TVKLRIQGIGPGRMGAIKGLQLTELNIVSITDDTRVSWNPP 188
>UniRef50_UPI0000586F02 Cluster: PREDICTED: hypothetical protein
isoform 1; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: hypothetical protein isoform 1 -
Strongylocentrotus purpuratus
Length = 261
Score = 70.1 bits (164), Expect = 7e-11
Identities = 49/143 (34%), Positives = 65/143 (45%), Gaps = 13/143 (9%)
Frame = +3
Query: 96 SVTSVVRLFQTSTPQATEKFVHKRIPAPDEGVQGEKIIDLDSALKTKQ------------ 239
S+ S+ RL Q +T AT P PD G + D A +T +
Sbjct: 71 SLVSIRRLQQDTT--ATTSATGASSPIPDPSSGGHSLEDAAIAEETAEGNETLFEDEHGS 128
Query: 240 NLFPTLESDYQL-YNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTK 416
N+F S L +NGIPY LPI NI+ ++NNT ++ E G+ SCG EGFKN K
Sbjct: 129 NMFIAPSSTESLIFNGIPYDQLPIVNIKATYNNTHVSVAEHTGRTVARTSCGTEGFKNAK 188
Query: 417 KGXXXXXXXXXXXXXXKAVVQGI 485
KG KAV +G+
Sbjct: 189 KGTAIAAQTAAIAAATKAVDKGM 211
Score = 60.5 bits (140), Expect = 5e-08
Identities = 27/40 (67%), Positives = 34/40 (85%)
Frame = +1
Query: 487 NTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 606
N VRV ++G+GPGR +++KGLQMGGL+IVSITDNT V N
Sbjct: 212 NAVRVVIKGIGPGRQTSIKGLQMGGLDIVSITDNTPVPHN 251
>UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whole
genome shotgun sequence; n=3; cellular organisms|Rep:
Chromosome undetermined SCAF14706, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 63.7 bits (148), Expect = 6e-09
Identities = 31/95 (32%), Positives = 46/95 (48%)
Frame = +3
Query: 282 GIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXX 461
G P++ LPI +++ ++NNT +T+ GK + SCG EGFKN KK
Sbjct: 98 GTPFEQLPIAHVKATYNNTHIQVTDSAGKSMVRTSCGTEGFKNIKKSTPIAAQTAGISAA 157
Query: 462 XKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGGFE 566
KA +G+ + LG + + LT GG E
Sbjct: 158 AKATAKGVTFVRVVVKGLGPGRLSAIKGLTMGGLE 192
Score = 60.9 bits (141), Expect = 4e-08
Identities = 29/38 (76%), Positives = 32/38 (84%)
Frame = +1
Query: 493 VRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 606
VRV V+GLGPGRLSA+KGL MGGL +VSITDNT V N
Sbjct: 168 VRVVVKGLGPGRLSAIKGLTMGGLEVVSITDNTPVPHN 205
>UniRef50_Q23155 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 208
Score = 60.1 bits (139), Expect = 7e-08
Identities = 33/104 (31%), Positives = 50/104 (48%)
Frame = +3
Query: 249 PTLESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXX 428
PT E+ Q ++G+ Y +LP+ IR S NNT+ T+ + +V SC +EGFKN +K
Sbjct: 80 PTAETLKQQFDGVAYHELPLVYIRASKNNTLVTVMDNKNEVITSTSCRLEGFKNARKKTT 139
Query: 429 XXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGG 560
+ V +GI + LG + C + LT G
Sbjct: 140 IAGQTTGVAAGQRLVRRGIRTVRVQVKGLGPGRMTCVKGLTVAG 183
Score = 52.0 bits (119), Expect = 2e-05
Identities = 22/38 (57%), Positives = 32/38 (84%)
Frame = +1
Query: 478 RXYNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNT 591
R TVRV+V+GLGPGR++ VKGL + G+++VSI+D+T
Sbjct: 156 RGIRTVRVQVKGLGPGRMTCVKGLTVAGVHVVSISDHT 193
>UniRef50_P82912 Cluster: 28S ribosomal protein S11, mitochondrial
precursor; n=31; cellular organisms|Rep: 28S ribosomal
protein S11, mitochondrial precursor - Homo sapiens
(Human)
Length = 194
Score = 56.0 bits (129), Expect = 1e-06
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Frame = +3
Query: 231 TKQNLFPTL--ESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGF 404
TK +++P + E + G ++++PI +I+ SHNNT + + SCG EGF
Sbjct: 58 TKFSIYPPIPGEESSLRWAGKKFEEIPIAHIKASHNNTQIQVVSASNEPLAFASCGTEGF 117
Query: 405 KNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGGFE 566
+N KKG +A +G+ + LG + L GG E
Sbjct: 118 RNAKKGTGIAAQTAGIAAAARAKQKGVIHIRVVVKGLGPGRLSAMHGLIMGGLE 171
Score = 55.6 bits (128), Expect = 2e-06
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = +1
Query: 493 VRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 606
+RV V+GLGPGRLSA+ GL MGGL ++SITDNT + N
Sbjct: 147 IRVVVKGLGPGRLSAMHGLIMGGLEVISITDNTPIPHN 184
>UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular
organisms|Rep: Ribosomal protein S11 - Chlorokybus
atmophyticus (Soil alga)
Length = 262
Score = 43.6 bits (98), Expect = 0.007
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +1
Query: 493 VRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 606
V V+++G GPGR S+++GLQ+GGL I I D T + N
Sbjct: 215 VTVKIRGFGPGRDSSLRGLQIGGLKIYKIQDTTPLPHN 252
Score = 38.3 bits (85), Expect = 0.25
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 300 LPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQ 479
L + +I+ + NNTI T+T+ DG + S G GFK +++ K++
Sbjct: 151 LGVAHIQTTLNNTIITITDLDGNTKSWSSSGSIGFKGSRRKTSYAAQAAAETAAKKSIQL 210
Query: 480 GI 485
GI
Sbjct: 211 GI 212
>UniRef50_Q5DCW6 Cluster: SJCHGC02467 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC02467 protein - Schistosoma
japonicum (Blood fluke)
Length = 185
Score = 43.2 bits (97), Expect = 0.009
Identities = 23/65 (35%), Positives = 32/65 (49%)
Frame = +3
Query: 291 YKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKA 470
Y ++PI ++ NN I TLT+ +G+V SCG EGF+N +K KA
Sbjct: 70 YYEIPILHLISRKNNLIATLTDCNGRVLNGTSCGAEGFRNARKKSTVAAQTVGISVGLKA 129
Query: 471 VVQGI 485
GI
Sbjct: 130 KKLGI 134
Score = 41.5 bits (93), Expect = 0.027
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +1
Query: 493 VRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSW 603
VRV ++G G +LSA+ GL + GL IVS+TD+T+V +
Sbjct: 137 VRVILRGKGSDKLSALSGLNISGLKIVSLTDDTNVHY 173
>UniRef50_A2QQ89 Cluster: Contig An08c0050, complete genome; n=6;
Eurotiomycetidae|Rep: Contig An08c0050, complete genome
- Aspergillus niger
Length = 235
Score = 40.3 bits (90), Expect = 0.062
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +3
Query: 189 VQGEKIIDLDSALKTKQNLFPTLESDYQLYNGIPYKDL-PICNIRV--SHNNTIFTLTEP 359
+QGEK+ + + +LE++ L N PY D P ++ V +NTI TLT P
Sbjct: 77 MQGEKVRSNQGVSRDYSRMAESLEAE--LINQ-PYADRSPPYHLHVYCHKHNTILTLTRP 133
Query: 360 DGKVRIIRSCGMEGFKNTKK 419
+G + +SCG GF+ +K+
Sbjct: 134 NGDPMLAKSCGHLGFRKSKR 153
>UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S11 - Prototheca wickerhamii
Length = 128
Score = 39.9 bits (89), Expect = 0.082
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 306 ICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQG 482
I +I+ + NNT+ TLT+ +G + S G GFKN++K KA +G
Sbjct: 19 IVHIQSTTNNTLITLTDLEGNTQFFVSAGTLGFKNSRKSTVYASGAAAEALASKAFNEG 77
Score = 37.9 bits (84), Expect = 0.33
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 484 YNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 606
Y T+ V+++GLG G+ SA++GLQ L I I + T ++ N
Sbjct: 78 YRTIIVKIKGLGYGKKSAIRGLQKSNLVIKQIQEVTPIAHN 118
>UniRef50_P27419 Cluster: Chloroplast 30S ribosomal protein S11;
n=1; Euglena gracilis|Rep: Chloroplast 30S ribosomal
protein S11 - Euglena gracilis
Length = 129
Score = 39.5 bits (88), Expect = 0.11
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 306 ICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQGI 485
I +I+ ++NN + ++++P G V S G GFK++KK KA+ QG+
Sbjct: 20 IVHIKTTYNNVLVSVSDPKGNVIAWSSSGACGFKSSKKATPLATKTTTAIAVKKAIEQGL 79
>UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellular
organisms|Rep: 30S ribosomal protein S11 - Polaromonas
sp. (strain JS666 / ATCC BAA-500)
Length = 134
Score = 38.3 bits (85), Expect = 0.25
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 306 ICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQGI 485
I ++ S NNTI T+T+ G S G +GFK ++K A+ QGI
Sbjct: 25 IAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSRKSTPFAAQVASEVAGRAAIEQGI 84
>UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellular
organisms|Rep: 30S ribosomal protein S11 - Acidobacteria
bacterium (strain Ellin345)
Length = 142
Score = 38.3 bits (85), Expect = 0.25
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 306 ICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKG 422
+ +I+ S NNTI T+++P G V +S G GF+ ++KG
Sbjct: 33 LAHIQASFNNTIVTISDPSGNVVSWKSSGSLGFRGSRKG 71
>UniRef50_Q9TCB8 Cluster: Ribosomal protein S11; n=1; Nephroselmis
olivacea|Rep: Ribosomal protein S11 - Nephroselmis
olivacea
Length = 128
Score = 37.5 bits (83), Expect = 0.44
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = +1
Query: 493 VRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 606
+ V+++GLG GR S+++GL++GGL I I D T + N
Sbjct: 81 IDVKLKGLGNGRRSSLRGLKLGGLKIRKIQDITPLPHN 118
Score = 33.1 bits (72), Expect = 9.4
Identities = 23/89 (25%), Positives = 34/89 (38%)
Frame = +3
Query: 300 LPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQ 479
L I ++ + NNTI TLT+ G + S G GFK ++ K+
Sbjct: 17 LGIIYVQSTKNNTILTLTDSVGAAKAWSSAGSVGFKGARRATGFAAQTAAETLAKKSSRL 76
Query: 480 GI*YCTSKSPRLGTRAIVCSQRLTNGGFE 566
G + K LG + L GG +
Sbjct: 77 GFFHIDVKLKGLGNGRRSSLRGLKLGGLK 105
>UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33;
Bacteria|Rep: 30S ribosomal protein S11 - Mycoplasma
pulmonis
Length = 136
Score = 37.5 bits (83), Expect = 0.44
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +3
Query: 306 ICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQGI 485
+ +I +HNNTI T ++ G V S G G+K TKK KA GI
Sbjct: 22 VAHIHSTHNNTIVTFSDEKGNVISWASSGTIGYKGTKKKTAYAAGLAAQNASEKAKEHGI 81
Score = 33.5 bits (73), Expect = 7.1
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +1
Query: 493 VRVRVQGLGPGRLSAVKGLQMGGLN---IVSITDNTHVSWNPP 612
V VRV+G+G GR +A K +++ G++ IV +T H PP
Sbjct: 84 VSVRVKGIGQGRDAARKQIEVSGISVSQIVDVTPQAHNGTRPP 126
>UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15;
Bacteria|Rep: 30S ribosomal protein S11 - Silicibacter
pomeroyi
Length = 130
Score = 37.1 bits (82), Expect = 0.58
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +1
Query: 490 TVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 606
T+ V VQG G GR SA++ L G NI SI D T ++ N
Sbjct: 82 TLEVEVQGPGSGRESALRALAAVGFNITSIRDVTPIAHN 120
>UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S11 -
Victivallis vadensis ATCC BAA-548
Length = 148
Score = 36.3 bits (80), Expect = 1.0
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 493 VRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 606
V VR++G G GR SAV+G+ G+ I +I D T V N
Sbjct: 101 VEVRIKGPGAGRESAVRGIAAAGMEISTIKDITPVPHN 138
>UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11;
n=85; Tracheophyta|Rep: Chloroplast 30S ribosomal
protein S11 - Arabidopsis thaliana (Mouse-ear cress)
Length = 138
Score = 36.3 bits (80), Expect = 1.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 306 ICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQGI 485
+ +++ S NNTI T+T+ G+V S G GF+ T++G V QG+
Sbjct: 29 VIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGM 88
>UniRef50_A6BM57 Cluster: Ribosomal protein S11; n=1; Gnetum
parvifolium|Rep: Ribosomal protein S11 - Gnetum
parvifolium
Length = 132
Score = 35.9 bits (79), Expect = 1.3
Identities = 21/42 (50%), Positives = 23/42 (54%)
Frame = +3
Query: 297 DLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKG 422
D I +IR S NNTI T+T G V S G GFK KKG
Sbjct: 23 DKGIIHIRASFNNTIITVTNVLGCVISWSSAGACGFKGPKKG 64
>UniRef50_Q9TLV1 Cluster: Chloroplast 30S ribosomal protein S11;
n=10; cellular organisms|Rep: Chloroplast 30S ribosomal
protein S11 - Cyanidium caldarium
Length = 129
Score = 35.5 bits (78), Expect = 1.8
Identities = 19/36 (52%), Positives = 21/36 (58%)
Frame = +3
Query: 315 IRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKG 422
I + NNTI T T+ GKV S G EGFK KKG
Sbjct: 23 INSTFNNTIVTATDCYGKVIAWASGGTEGFKGAKKG 58
>UniRef50_Q5A3W6 Cluster: Potential spliceosomal U4/U6 snRNP protein
Prp4p; n=1; Candida albicans|Rep: Potential spliceosomal
U4/U6 snRNP protein Prp4p - Candida albicans (Yeast)
Length = 458
Score = 34.7 bits (76), Expect = 3.1
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 225 LKTKQNLFPTLESDYQLYNG--IPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGME 398
LK+++ L L S Y++Y IP I NI++S+N+ DG + ++ S +
Sbjct: 86 LKSRRQLNSNL-SKYEIYGSQFIPGTTRTISNIKISNNDKYIACGSWDGSINLLNSQDLS 144
Query: 399 GFKNTKKG 422
FK T G
Sbjct: 145 IFKKTPSG 152
>UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellular
organisms|Rep: 30S ribosomal protein S11 - Shewanella
oneidensis
Length = 130
Score = 34.3 bits (75), Expect = 4.1
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 493 VRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWN 606
+ V V+G GPGR SA++ L G I +ITD T + N
Sbjct: 83 LEVFVKGPGPGRESAIRALNAVGYKITNITDVTPIPHN 120
>UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;
Streptophyta|Rep: Plastid 30S ribosomal protein S11 -
Epifagus virginiana (Beechdrops)
Length = 136
Score = 34.3 bits (75), Expect = 4.1
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 306 ICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQGI 485
+ +++ S NNTI +T+ G+V S G GFK T++G +VQG+
Sbjct: 29 VIHVQTSFNNTIVAVTDIKGRVVSWSSAGTCGFKGTRRGTSFAAQIAATNAI--RIVQGM 86
Query: 486 *YC--TSKSPRLGTRAIV 533
K P +G A++
Sbjct: 87 QRAEVMIKGPGIGRDAVL 104
>UniRef50_Q6SGQ1 Cluster: Putative uncharacterized protein; n=1;
uncultured bacterium 463|Rep: Putative uncharacterized
protein - uncultured bacterium 463
Length = 506
Score = 33.9 bits (74), Expect = 5.4
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 90 RASVTSVVRLFQTSTPQATEKFVHKRIPAPDEG-VQGEKIIDLDSALKTKQNLFP-TLES 263
RA++ RL + +ATEK + + PD+G V E+I L LK L P TL S
Sbjct: 382 RAAMLQPDRLSDVAVAEATEKLLTYAVTIPDQGPVLKEQIATLQVLLKQANTLVPLTLRS 441
Query: 264 D 266
D
Sbjct: 442 D 442
>UniRef50_Q7R835 Cluster: Putative uncharacterized protein PY07388;
n=1; Plasmodium yoelii yoelii|Rep: Putative
uncharacterized protein PY07388 - Plasmodium yoelii
yoelii
Length = 197
Score = 33.5 bits (73), Expect = 7.1
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +3
Query: 189 VQGEKIIDLDSALKTKQNLFPTLESDYQLYNGIPYKDLPICNIRVSHNNTIFTL 350
V E IID+D + +NLF TL D ++YN I D + N+ ++++IF L
Sbjct: 39 VLNEPIIDIDFS----ENLFHTLLFDLEIYNNIYTLDETLLNLEKLNHSSIFKL 88
>UniRef50_Q9PQN5 Cluster: 30S ribosomal protein S11; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S11 - Ureaplasma
parvum (Ureaplasma urealyticum biotype 1)
Length = 121
Score = 33.5 bits (73), Expect = 7.1
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +3
Query: 306 ICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKK 419
I I + NNTI TL + G V S G G+K TKK
Sbjct: 13 IAYIHATKNNTIITLADEQGSVLSWASSGSIGYKGTKK 50
>UniRef50_Q49081 Cluster: 30S ribosomal protein; n=1; Mycoplasma
capricolum|Rep: 30S ribosomal protein - Mycoplasma
capricolum
Length = 80
Score = 33.1 bits (72), Expect = 9.4
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 294 KDLP--ICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKK 419
K++P I +I + NNTI T+++ G V S G GFK +KK
Sbjct: 6 KNIPKGIAHIHSTFNNTIVTVSDEKGNVLSWSSAGAIGFKGSKK 49
>UniRef50_Q3E673 Cluster: Glycosyl transferase, family 2; n=3;
Chloroflexaceae|Rep: Glycosyl transferase, family 2 -
Chloroflexus aurantiacus J-10-fl
Length = 313
Score = 33.1 bits (72), Expect = 9.4
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 69 SALRNSVRASVTSVVRLFQTST---PQATEKFVHKRIPAPDEGVQGEKIIDLDSALKTKQ 239
+A ++RAS V L + T P + ++ VH P GV G ++++ D L+
Sbjct: 74 TANNQAIRASSGRYVMLLNSDTIARPGSIQRLVHFLDTHPQVGVVGPRLLNADGTLQPSW 133
Query: 240 NLFPTL 257
LFP L
Sbjct: 134 ALFPNL 139
>UniRef50_Q9G885 Cluster: Ribosomal protein S11; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S11 - Malawimonas
jakobiformis
Length = 134
Score = 33.1 bits (72), Expect = 9.4
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 291 YKDLPICNIRV--SHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKK 419
YK IC + V + NNT TLT G + S G GFK K+
Sbjct: 18 YKKYKICKLFVKKTQNNTFVTLTNIKGNTLVYYSTGKLGFKGAKR 62
>UniRef50_Q05FK3 Cluster: 30S ribosomal protein S11; n=2; cellular
organisms|Rep: 30S ribosomal protein S11 - Carsonella
ruddii (strain PV)
Length = 118
Score = 33.1 bits (72), Expect = 9.4
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +3
Query: 291 YKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKK 419
YK I I + NNTI TLT+ G + S G+ G+K KK
Sbjct: 4 YKKRGIIYIHSTFNNTISTLTDVFGNTIVWYSAGILGYKGPKK 46
>UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellular
organisms|Rep: 30S ribosomal protein S11 - Bacillus
subtilis
Length = 131
Score = 33.1 bits (72), Expect = 9.4
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +3
Query: 306 ICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEGFKNTKKGXXXXXXXXXXXXXXKAVVQGI 485
I +IR + NNTI T+T+ G S G GF+ ++K ++ G+
Sbjct: 22 IAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGSRKSTPFAAQMAAETAAKGSIEHGL 81
Query: 486 --*YCTSKSPRLGTRAIV 533
T K P G A +
Sbjct: 82 KTLEVTVKGPGSGREAAI 99
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,779,546
Number of Sequences: 1657284
Number of extensions: 11756728
Number of successful extensions: 27083
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 26151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27069
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77062818868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -