Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_K12
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    29   0.86 
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    26   8.0  

>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 57  FKMISALRNSVRASVTSVVRLFQTSTPQA 143
           F  I+ LRNSVR SVT   +   T TP +
Sbjct: 202 FLKIAGLRNSVRVSVTVTSKKIDTRTPSS 230


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 204 IIDLDSALKTKQ-NLFPTLESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVR 374
           + D+++A   K  ++ P L   Y   N I    + + NIR    N I  L  PDG VR
Sbjct: 4   LFDINAAAAVKDYSIKPRLS--YNTVNSITGPLVILDNIRRPQYNEIVNLNLPDGSVR 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,185
Number of Sequences: 5004
Number of extensions: 51957
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)