Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_K12
         (866 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ062760-1|AAY56633.1|  200|Drosophila melanogaster mitochondria...   112   7e-25
AY095194-1|AAM12287.1|  200|Drosophila melanogaster RE01527p pro...   112   7e-25
AE014297-2304|AAF55385.1|  200|Drosophila melanogaster CG5184-PA...   112   7e-25
AY089696-1|AAL90434.1|  178|Drosophila melanogaster RH70248p pro...    83   5e-16
AE014297-2305|AAN13731.1|   91|Drosophila melanogaster CG5184-PB...    30   4.7  

>DQ062760-1|AAY56633.1|  200|Drosophila melanogaster mitochondrial
           ribosomal proteinS11 protein.
          Length = 200

 Score =  112 bits (269), Expect = 7e-25
 Identities = 65/173 (37%), Positives = 89/173 (51%), Gaps = 3/173 (1%)
 Frame = +3

Query: 51  VKFKMISALRNSVRASVTSVVRLFQTST---PQATEKFVHKRIPAPDEGVQGEKIIDLDS 221
           +K   +SALR+    +V        TS         K +   +PA DEG  GEK +D+D+
Sbjct: 3   LKSVFLSALRSITMPAVPLQTSRIHTSACWRKAEDRKEMLASLPAKDEGTVGEKTVDIDT 62

Query: 222 ALKTKQNLFPTLESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEG 401
            +  K   FP   +   L+NGIP+ +LPICNIRVS NNTI ++T+  G +R+IRSCG+EG
Sbjct: 63  LINRKAKFFPDASTANTLFNGIPFNELPICNIRVSPNNTIISVTDHKGVLRLIRSCGIEG 122

Query: 402 FKNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGG 560
           FKNT+KG              KA+  G      K   LG   +   + L  GG
Sbjct: 123 FKNTRKGTNIAAQATAVTISGKAIELGWKTVRVKVRGLGPGRMSAIKGLQMGG 175



 Score = 83.0 bits (196), Expect = 5e-16
 Identities = 36/43 (83%), Positives = 42/43 (97%)
 Frame = +1

Query: 484 YNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPP 612
           + TVRV+V+GLGPGR+SA+KGLQMGGLNIVSITDNTHVS+NPP
Sbjct: 150 WKTVRVKVRGLGPGRMSAIKGLQMGGLNIVSITDNTHVSFNPP 192


>AY095194-1|AAM12287.1|  200|Drosophila melanogaster RE01527p
           protein.
          Length = 200

 Score =  112 bits (269), Expect = 7e-25
 Identities = 65/173 (37%), Positives = 89/173 (51%), Gaps = 3/173 (1%)
 Frame = +3

Query: 51  VKFKMISALRNSVRASVTSVVRLFQTST---PQATEKFVHKRIPAPDEGVQGEKIIDLDS 221
           +K   +SALR+    +V        TS         K +   +PA DEG  GEK +D+D+
Sbjct: 3   LKSVFLSALRSITMPAVPLQTSRIHTSACWRKAEDRKEMLASLPAKDEGTVGEKTVDIDT 62

Query: 222 ALKTKQNLFPTLESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEG 401
            +  K   FP   +   L+NGIP+ +LPICNIRVS NNTI ++T+  G +R+IRSCG+EG
Sbjct: 63  LINRKAKFFPDASTANTLFNGIPFNELPICNIRVSPNNTIISVTDHKGVLRLIRSCGIEG 122

Query: 402 FKNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGG 560
           FKNT+KG              KA+  G      K   LG   +   + L  GG
Sbjct: 123 FKNTRKGTNIAAQATAVTISGKAIELGWKTVRVKVRGLGPGRMSAIKGLQMGG 175



 Score = 83.0 bits (196), Expect = 5e-16
 Identities = 36/43 (83%), Positives = 42/43 (97%)
 Frame = +1

Query: 484 YNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPP 612
           + TVRV+V+GLGPGR+SA+KGLQMGGLNIVSITDNTHVS+NPP
Sbjct: 150 WKTVRVKVRGLGPGRMSAIKGLQMGGLNIVSITDNTHVSFNPP 192


>AE014297-2304|AAF55385.1|  200|Drosophila melanogaster CG5184-PA,
           isoform A protein.
          Length = 200

 Score =  112 bits (269), Expect = 7e-25
 Identities = 65/173 (37%), Positives = 89/173 (51%), Gaps = 3/173 (1%)
 Frame = +3

Query: 51  VKFKMISALRNSVRASVTSVVRLFQTST---PQATEKFVHKRIPAPDEGVQGEKIIDLDS 221
           +K   +SALR+    +V        TS         K +   +PA DEG  GEK +D+D+
Sbjct: 3   LKSVFLSALRSITMPAVPLQTSRIHTSACWRKAEDRKEMLASLPAKDEGTVGEKTVDIDT 62

Query: 222 ALKTKQNLFPTLESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEG 401
            +  K   FP   +   L+NGIP+ +LPICNIRVS NNTI ++T+  G +R+IRSCG+EG
Sbjct: 63  LINRKAKFFPDASTANTLFNGIPFNELPICNIRVSPNNTIISVTDHKGVLRLIRSCGIEG 122

Query: 402 FKNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGG 560
           FKNT+KG              KA+  G      K   LG   +   + L  GG
Sbjct: 123 FKNTRKGTNIAAQATAVTISGKAIELGWKTVRVKVRGLGPGRMSAIKGLQMGG 175



 Score = 83.0 bits (196), Expect = 5e-16
 Identities = 36/43 (83%), Positives = 42/43 (97%)
 Frame = +1

Query: 484 YNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPP 612
           + TVRV+V+GLGPGR+SA+KGLQMGGLNIVSITDNTHVS+NPP
Sbjct: 150 WKTVRVKVRGLGPGRMSAIKGLQMGGLNIVSITDNTHVSFNPP 192


>AY089696-1|AAL90434.1|  178|Drosophila melanogaster RH70248p
           protein.
          Length = 178

 Score = 83.0 bits (196), Expect = 5e-16
 Identities = 36/43 (83%), Positives = 42/43 (97%)
 Frame = +1

Query: 484 YNTVRVRVQGLGPGRLSAVKGLQMGGLNIVSITDNTHVSWNPP 612
           + TVRV+V+GLGPGR+SA+KGLQMGGLNIVSITDNTHVS+NPP
Sbjct: 128 WKTVRVKVRGLGPGRMSAIKGLQMGGLNIVSITDNTHVSFNPP 170



 Score = 72.9 bits (171), Expect = 5e-13
 Identities = 57/173 (32%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
 Frame = +3

Query: 51  VKFKMISALRNSVRASVTSVVRLFQTST---PQATEKFVHKRIPAPDEGVQGEKIIDLDS 221
           +K   +SALR+    +V        TS         K +   +PA DEG  GEK +D+D+
Sbjct: 3   LKSVFLSALRSITMPAVPLQTSRIHTSACWRKAEDRKEMLAFLPAKDEGTVGEKTVDIDT 62

Query: 222 ALKTKQNLFPTLESDYQLYNGIPYKDLPICNIRVSHNNTIFTLTEPDGKVRIIRSCGMEG 401
            +                       +LPICNIRVS NNTI ++T+  G +R+IRSCG+EG
Sbjct: 63  LIN----------------------ELPICNIRVSPNNTIISVTDHKGVLRLIRSCGIEG 100

Query: 402 FKNTKKGXXXXXXXXXXXXXXKAVVQGI*YCTSKSPRLGTRAIVCSQRLTNGG 560
           FKNT+KG              KA+  G      K   LG   +   + L  GG
Sbjct: 101 FKNTRKGTNIAAQATAVTISGKAIELGWKTVRVKVRGLGPGRMSAIKGLQMGG 153


>AE014297-2305|AAN13731.1|   91|Drosophila melanogaster CG5184-PB,
           isoform B protein.
          Length = 91

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 51  VKFKMISALRNSVRASVTSVVRLFQTST---PQATEKFVHKRIPAPDEGVQGEKIIDLDS 221
           +K   +SALR+    +V        TS         K +   +PA DEG  GEK +D+D+
Sbjct: 3   LKSVFLSALRSITMPAVPLQTSRIHTSACWRKAEDRKEMLASLPAKDEGTVGEKTVDIDT 62

Query: 222 AL 227
            +
Sbjct: 63  LI 64


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,798,200
Number of Sequences: 53049
Number of extensions: 541337
Number of successful extensions: 1408
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4188579408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)