Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_K11
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0095 + 5243703-5243965,5244061-5244173,5244432-5244481,524... 34 0.16
01_01_0589 + 4394154-4394513,4394641-4394762,4394862-4395057,439... 33 0.28
08_01_0351 + 3095639-3095995,3096134-3096187,3096407-3096490,309... 31 1.5
05_07_0008 - 27007919-27007944,27008070-27008127,27008218-270082... 31 1.5
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 31 1.5
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375... 30 2.0
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 29 3.5
01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736 29 3.5
10_08_0947 + 21749062-21749411,21750471-21750759 29 4.6
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 29 6.1
01_01_0356 - 2814175-2815401 29 6.1
>10_02_0095 +
5243703-5243965,5244061-5244173,5244432-5244481,
5244629-5244862,5245394-5245543,5245816-5245836,
5245920-5246087
Length = 332
Score = 33.9 bits (74), Expect = 0.16
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Frame = +3
Query: 117 KSKMNNADLYRKSNSLQKRDALRCLEEHANKIKWKKIGDRVIDLGCADGSVTDILKVYMP 296
K + +A ++N + + + L +EEH K + ++D+GC+ G T L P
Sbjct: 156 KRAIPDAGSIEEANQIVRGNWLNAIEEHHLKYSGNCQINDILDIGCSVGVSTRYLAEKFP 215
Query: 297 KNYGRLVGCDISEEMVKY-ANKHHGFGRTS-FRVLDIEGDLTADLKQGFDHVFSFY 458
R VG D+S + A+K R + R + G+ T FD V Y
Sbjct: 216 S--ARTVGLDLSPYFLAVAAHKEEKLSRQNPIRWVHANGEATGLPSNSFDLVSLAY 269
>01_01_0589 +
4394154-4394513,4394641-4394762,4394862-4395057,
4395275-4395392,4395499-4395546,4395691-4395791,
4395893-4396000
Length = 350
Score = 33.1 bits (72), Expect = 0.28
Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 1/131 (0%)
Frame = +3
Query: 132 NADLYRKSNSLQKRDALRCLEEHANKIKWKKIGDRVIDLGCADGSVTD-ILKVYMPKNYG 308
N L+++ + RC E A + +K+GD + L A V + + YG
Sbjct: 153 NVSLWQRLRRWLEEARGRCSPEEARQFSLEKLGDEIAMLDIALSGVDQRVGFCHNDLQYG 212
Query: 309 RLVGCDISEEMVKYANKHHGFGRTSFRVLDIEGDLTADLKQGFDHVFSFYTLHWIRDQER 488
++ + + ++ ++ F +F + + +++AD HV F I +Q R
Sbjct: 213 NIMIYEETRQVTLIDYEYASFNPVAFDIANHFCEMSADYHSATPHVLDFTKYPGIDEQRR 272
Query: 489 AFRNIFNLLGD 521
+ + G+
Sbjct: 273 FVQTYLSSSGE 283
>08_01_0351 +
3095639-3095995,3096134-3096187,3096407-3096490,
3096972-3097097,3097174-3097241,3097324-3097393,
3097597-3097662,3098404-3098454
Length = 291
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Frame = +3
Query: 234 RVIDLGCADGSVTDILKVYMPKNYGRLVGCDISEEMVKYANKHHGFGRTSFRVLDIEGDL 413
R I++G G + + + +P++ GRLV C+ E ++ A K++ + +V D++ L
Sbjct: 157 RCIEVGVYTGYSSLAVALALPES-GRLVACERDERCLEVAKKYYQRSGVAHKV-DVKHAL 214
Query: 414 TAD-LKQGFD-HVFSFYTLHWIRDQERAFRNIFNLL 515
AD LK D + Y ++ +R + + LL
Sbjct: 215 AADSLKLLIDGGEVNSYDFAFVDADKRMYEEYYELL 250
>05_07_0008 -
27007919-27007944,27008070-27008127,27008218-27008292,
27008417-27008470,27008574-27008840,27008913-27009193,
27009268-27009409,27009491-27009601,27009975-27010013,
27010173-27010310,27010415-27010552,27011438-27011562,
27011702-27011723
Length = 491
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 192 EEHANKIKWKKIGDRVIDLGCADGSVTDILKVYMPKNY-GRLVGCDISEEMVKYA 353
+E +K+ K G +V+D+GC G YM +NY ++G D+S MV +A
Sbjct: 242 KEFVDKLDLKP-GQKVLDVGCGIGGG----DFYMAENYDAHVLGIDLSINMVSFA 291
>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = -1
Query: 590 MRECAVNIK-DRSVAQEQK*AISFVAKQIENVPESSFLVSDPVEGVKRENVIKALFQVCG 414
+ E A N++ + V ++Q AIS AK + P+S F + P GV +K L +
Sbjct: 1021 LEEKATNMESENKVLRQQAVAISPTAKSLAAYPKSPFQLKTPENGVAPYGEVKPLPDIT- 1079
Query: 413 QIALYVEHPE 384
I+L + PE
Sbjct: 1080 PISLNPKEPE 1089
>01_07_0288 +
42534552-42534558,42535302-42537280,42537367-42537513,
42537982-42538526,42538906-42538981,42539357-42539437
Length = 944
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -3
Query: 444 RDQSLVSGLRSNRPLCRAP*TKSYRSRGVYSRISPFLR 331
RD +L GL NRP+ RA T + RS +SPF R
Sbjct: 581 RDIALSGGLDLNRPVPRAVRTTAVRSVNTSRAVSPFSR 618
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 63 TNLKKKSADKYF--IAKKNIKSKMNNADLYRKSNSLQKRDALRCLEEHA-NKIKW 218
+N KKK + + +KN K K +N D ++ L+ DA R EEH I W
Sbjct: 378 SNKKKKGKKEVVSDVGEKNSKVKKSNGDKEKRRTRLRIADAKRPQEEHVFGYIDW 432
>01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736
Length = 443
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 189 LEEHANKIKWKKIGDRVIDLGCADGSVTDILKVY 290
L EHA W+++GDR ADG V D + Y
Sbjct: 337 LGEHATAGGWREVGDRACAWTAADGIVDDRQQSY 370
>10_08_0947 + 21749062-21749411,21750471-21750759
Length = 212
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 633 ISPYHDNEDPEKEVKKIMERV-GFSNIEVQCXTLFYVYDDLDVLKKSVXAINPFNIPKDI 809
+S + P + +ER+ F+N C + Y+Y D + ++ A++ FN+ + +
Sbjct: 44 VSAFQGLTKPAISIGGYLERIFRFANCSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLL 103
Query: 810 LEDFL 824
+ L
Sbjct: 104 ITSVL 108
>12_02_0870 -
23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 432 GFDHVFSFYTLHWIRDQERAFRNIFNLLGDEGDCLLLFLGHTPIF 566
GF+HV + + WI +R+ + F DE C FL +PI+
Sbjct: 136 GFEHVIHQWAVQWIDTSDRSEEDSFCCYCDE-SCNGAFLAGSPIW 179
>01_01_0356 - 2814175-2815401
Length = 408
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 509 SAWRRRRLLTSVPGPHSYL*CLPHTLAYRKMAFLARARRSIYI 637
+AWRR + ++P P+ Y L H L +A + R+ ++++
Sbjct: 311 AAWRRDVMWMTLPAPYPYCVPLMHGLDMGSVAMMYRSSGAVFV 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,734,364
Number of Sequences: 37544
Number of extensions: 507323
Number of successful extensions: 1225
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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