Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_K10
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    29   1.3  
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine r...    27   5.1  
AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 140 IWLLARSKFLIPNILF*YNYXSKCXLKFFYVKLTMKIN*LVISS 9
           +W    SK+L+PN +F Y   S C   + +V L +    L++ S
Sbjct: 35  LWDRTYSKYLLPNSIFLYKRSSTCTRTYIFVILRLSSIILLVFS 78


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 200 LFLGGVQITLMFLCWATFLKIWLLA 126
           LFL G+Q+TL+F C+  FL I  LA
Sbjct: 214 LFLLGIQVTLLF-CFLLFLPICFLA 237


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 130 NNQIFKNVAQQRNMSVICTPPRNKVSRGEM-IFLASLM 240
           N + F+N+ Q+    V+  PP+N  S G + +F A +M
Sbjct: 572 NPKAFENLIQRNIREVLIVPPKNSTSPGTLNLFEAGVM 609


>AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein43 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 209 LETLFLGGVQITLMFLCWATFLKIWLLARSKFLIPNILF 93
           + T  L G+Q  L+FLC+A   +     +   +IP ILF
Sbjct: 91  ITTHLLLGIQYVLLFLCFARRHQAIAKIKQHHVIPEILF 129


>AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical
           protein B0205.13 protein.
          Length = 99

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 273 HPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVP 163
           HP W+    HHHQ   + H  + N V+ ++A +  +P
Sbjct: 54  HPWWN----HHHQCWHQYHHRTENTVNSQNAPSQVIP 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,076,193
Number of Sequences: 27780
Number of extensions: 155921
Number of successful extensions: 353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)