Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_K09
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    27   2.0  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    27   2.6  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    27   2.6  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   2.6  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    27   3.5  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   8.0  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   8.0  

>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +2

Query: 95  HQPVELEEHLKKLKQRWGNSVTSDHKRRSQLALVNSEISRYMD 223
           H     ++H+ +  Q +G++++S+  +R+   L  S +S+Y D
Sbjct: 39  HDKCPFKQHISENGQNFGSAISSNISQRNFKTLRASHLSQYRD 81


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 125 KKLKQRWGNSVTSDHKRRSQLALVNSEISRYMDTVIAPFLDTYHRNIQISYQQMTEKILK 304
           K  K++W   V  D     QL+  + ++ R     +   LDT + NIQ+    +T+ I+K
Sbjct: 20  KNTKEKW--DVIMD--ACDQLSSTSGDVGRNSIKFLNKRLDTANANIQLLALTLTDAIVK 75

Query: 305 RIKDEI 322
             K  I
Sbjct: 76  NCKTSI 81


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 92  QHQPVELEEHLKKLKQRWGNSVTSDHKRRSQLALVNSEI 208
           +HQ + LEE+ KK       SV ++ +  S + L NSEI
Sbjct: 115 RHQAMLLEENNKKATALANASVQNERQMPSSMTLDNSEI 153


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +2

Query: 281 QMTEKI-LKRIKDEINAAVVKKNKIYTALTI-IACNLTLPAMCNEDHRKIKTLANKHVAK 454
           Q  E+I L+R K  I +      K    L+I  +C   +   CN DH +I  L  +  + 
Sbjct: 224 QAGERIYLERQKLSIKSQSRNSRKKSKLLSINSSCYSNIVRFCNSDHHEIGKLPTEVASV 283

Query: 455 IYVCTEEARKSIAKMGIYAQEMI 523
           I    E+   S   + IY+  +I
Sbjct: 284 ISTLMEQGFWSFEAICIYSDNII 306


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 438 TSTLPRYMFARRKLESPLPKWEFTLKK*SI-SLRSTWREVW 557
           T   P+ +  R +L +P+ KW F     S+ S ++ W+  W
Sbjct: 432 TDLFPKELIWRSRLTNPVNKWYFERSVGSLKSSKTPWKLFW 472


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 503  IYAQEMINITKKHMEGSLVEAAKFIDKVRQRILQRKDI 616
            I  Q M  + KK + G +VEA + ++ +   + +R+D+
Sbjct: 975  IARQVMQRVVKKFIAGQVVEATELLEYLSFSLYRREDL 1012


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 464 CTEEARKSIAKMGIYAQEMINITKKHMEGSLV-EAAKFIDKVRQRILQRKDI 616
           C  E  KS+ K+GI++  M NI    + GSL+ +A        QRI Q + I
Sbjct: 809 CRSET-KSVFKLGIFSNRMFNIA---VGGSLIGQALVVYASPFQRIFQTEAI 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,998
Number of Sequences: 5004
Number of extensions: 53046
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)