Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_K05
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   128   4e-31
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   124   5e-30
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   0.48 
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   4.5  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   5.9  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  128 bits (309), Expect = 4e-31
 Identities = 61/101 (60%), Positives = 78/101 (77%), Gaps = 3/101 (2%)
 Frame = +1

Query: 85  HVKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVS 264
           HVK V C NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PKLY KL YCVS
Sbjct: 17  HVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVS 76

Query: 265 CAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 378
           CAIHS+VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 77  CAIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  124 bits (300), Expect = 5e-30
 Identities = 58/101 (57%), Positives = 77/101 (76%), Gaps = 3/101 (2%)
 Frame = +1

Query: 85  HVKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVS 264
           H K V C NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PK+Y KL YCVS
Sbjct: 17  HTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVS 76

Query: 265 CAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 378
           CAIH++VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 77  CAIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 118 RCVPKDKAIKKFVIRNIVEAAAVRDI 195
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 284 LSGTDRRKTEESVLLPRVTSLGT 352
           ++  DR +TE SVL  RVT +G+
Sbjct: 1   MAAVDRSRTEISVLSDRVTDVGS 23


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 256 CVSCAIHSKVVRNRSKKDRRIRTPPKS 336
           C SC+   K   N+  + RR++  PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,442,846
Number of Sequences: 5004
Number of extensions: 23554
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)