Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_K02
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    25   0.67 
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    23   2.0  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   3.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   4.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.2  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 318 VIKDKLEAQTALEKKALTSPILNDVKKNV 404
           +I+   +  T L  K LTSP+L D+K+ V
Sbjct: 313 LIRLMYQVTTNLVLKLLTSPLLPDIKEQV 341


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +1

Query: 406 HGLLKQKEWDLLHER*ETIHYGVKMVKRYPRLCYRLLTIMLSNIY 540
           H +   KEW  +          + M KR+  +   ++T+ L N Y
Sbjct: 138 HWVTIMKEWSFMEMSMRNYGSSINMKKRFVVMTSVIMTLALGNPY 182


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 368 DLSHFKRCQKKCNMDSSNKKSGTYCTKDRKLSI 466
           DLS+  R +K C +D   +    YC   + L++
Sbjct: 117 DLSYACREEKNCIIDKRQRNRCQYCRYQKCLNM 149


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 504 LQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKY 602
           ++ ++ H IK+I  EEY          ++K KY
Sbjct: 138 IKTLNGHEIKFIRKEEYISFESKVFHKLKKMKY 170


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 498 TLLQVVDNHVIKYIPPEEYKPMIKSNVKW 584
           T + V  N    Y+PP  +K   K ++ W
Sbjct: 106 TNVVVKHNGSCLYVPPGIFKSTCKMDITW 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,272
Number of Sequences: 336
Number of extensions: 4267
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)