Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_K02
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 32 0.10
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 27 3.0
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 27 3.9
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 3.9
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|... 27 3.9
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 27 3.9
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 26 5.2
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 26 6.9
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 26 6.9
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 25 9.1
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 31.9 bits (69), Expect = 0.10
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 573 NVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTP 752
+V+ EK Y + VG+ P +TK G F S + PK H+ F V S L +
Sbjct: 79 DVRTKEKHGYYAVQVGSGIRKPKSITKAEQGNFFSHNIYPKMHVREFRVRDASGLVSPGT 138
Query: 753 LYAT 764
++ T
Sbjct: 139 IFTT 142
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 486 KVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVT---KD 656
K + L+QV + I EE KP++ S V W E +K + E I S+ +
Sbjct: 361 KKARHLIQVSRDKYKLPISTEEIKPVVYSQVTWTEFEKKLLRYLVQEMIAKSIQSLPNTH 420
Query: 657 YCGIFDSVGM 686
C ++ VG+
Sbjct: 421 LCQVYKEVGL 430
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 276 DDYLTKENKQFLEEVIKDKLEAQTALEKK---ALTSPILN 386
DD + K +QF ++ ++D LE + L K +L SP L+
Sbjct: 119 DDTMEKRLEQFSDDTLQDTLETEKNLNSKTSESLKSPTLS 158
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 3.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 537 IPPEEYKPMIKSNVKWVEKQKY 602
I PE +K +I+ N+ W + + Y
Sbjct: 418 IDPESHKALIEKNISWADDEYY 439
>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 303
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = +1
Query: 418 KQKEWDLLHER*ETIHYGVKMVKRYPRLCYRLLTIMLS 531
K+++W+ + E I++G++ V P + L++ + S
Sbjct: 254 KKQDWEAALAKIEEIYFGIRPVSNQPNILANLMSSLFS 291
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 676 LSNIPQ*SLVTTLGSMFSAPTNIQPYF 596
+ N PQ S L + FS P N QP F
Sbjct: 316 IQNQPQQSAFQNLNTQFSLPNNSQPVF 342
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 115 KIVKTLCSQIV*NYYGVLYKNRGLIMRRVIFVVHRGSLDFVHRIGMSQKRECGQ 276
KI ++ S + YYG Y N + + GSLD +++ SQ G+
Sbjct: 127 KINRSCTSPYIVKYYGACYNNAECQLNIAMEYCGAGSLDAIYKRVRSQGGRTGE 180
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 501 LLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKY 602
LL+V+ N V Y+PP K + + V +KY
Sbjct: 266 LLKVIKNPVTDYLPPNCRKATLSFDAPTVPPRKY 299
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = -3
Query: 703 RCLFGSIPTLSNIPQ*SLVTTLGSMFSAPTNIQPYFCFSTHFTLDFIIGLYSSGGIYLIT 524
+C+ ++ LS + SL+ GS +AP + PYF FS F + Y+S +++
Sbjct: 410 KCVASNVSMLSFLGW-SLILHFGS--NAP--LYPYFSFSKEEPYSFKLTFYASTAVWISE 464
Query: 523 *LSTTCNRVV 494
+++ R++
Sbjct: 465 MVASYLTRLI 474
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -2
Query: 734 SRFW*YNKSAEVPFWQHSNTVKYSTVIFGDN 642
SR+W Y E+P W + IFG N
Sbjct: 86 SRWWGYVNRIEIPLWMRVPAFGLYSKIFGCN 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,931
Number of Sequences: 5004
Number of extensions: 70135
Number of successful extensions: 226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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