Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_K02
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_35384| Best HMM Match : PRA1 (HMM E-Value=6.7)                      28   7.3  
SB_13714| Best HMM Match : PaREP8 (HMM E-Value=1.9)                    28   7.3  
SB_33954| Best HMM Match : Ion_trans_2 (HMM E-Value=0.74)              28   9.6  

>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
 Frame = +3

Query: 315 EVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWCKDGKKVS 494
           E ++ ++E Q  L+ +    P+       V W   +KR G +  K+G   LW KDG+++ 
Sbjct: 336 EDMQVEIERQKRLQDR---QPVAIPAPGEVEWQKSSKRTGAVGVKLGMSALWLKDGRRLP 392

Query: 495 TTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAEN-IDPSVVTKDYCGIF 671
            TL+Q+ D  V+        +  +       + Q    + VGA N ++ + + K   G F
Sbjct: 393 VTLIQIKDCEVV--------QARVAKGHGGRDPQTE--LQVGAVNKLELNQIGKAQFGHF 442

Query: 672 DSVGMLPKRHLCRFVVSPESALPNG 746
               + PKR +C F V+P++ L  G
Sbjct: 443 KRFSVRPKRKVCSFPVTPDALLTPG 467


>SB_50262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 255 PKERVWTDDYLTKENKQFLEEVIK 326
           PK RV TD  LTKEN  FL++  K
Sbjct: 575 PKIRVETDGSLTKENFSFLQKTNK 598


>SB_35384| Best HMM Match : PRA1 (HMM E-Value=6.7)
          Length = 654

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +3

Query: 576 VKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN 743
           +  + KQ+   +L+G +    +V+TK YC  +D     P+ H+ + +    +  PN
Sbjct: 164 INCIAKQEKAVLLIGEQGTAKTVMTKGYCERYD-----PELHVFKAMNFSSATTPN 214


>SB_13714| Best HMM Match : PaREP8 (HMM E-Value=1.9)
          Length = 389

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -3

Query: 343 CASSLSFITSSKNCLFSLVR*SSVHTLSFGTYQYGGRNLGCR-DAPRILHAALSNLDFCK 167
           CA+  +F+T +  C F        + +   T QY    L  + D    +   L + DF +
Sbjct: 13  CATECNFVTRTPTCRFKTCNDLRAYIVGTCTAQYSQNGLAVKSDGEHGMARKLCSSDFIQ 72

Query: 166 APHNNFKLFG 137
           A   N+  +G
Sbjct: 73  ARKTNYPGWG 82


>SB_33954| Best HMM Match : Ion_trans_2 (HMM E-Value=0.74)
          Length = 330

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 258 KERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVT 407
           +E  +T D  +     F  E +KDK+ AQT     + T+P  +  K+N+T
Sbjct: 233 RESFYTTDADSANEGNFALEELKDKMRAQTQGSDSSNTNP--HSSKENIT 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,595,660
Number of Sequences: 59808
Number of extensions: 490996
Number of successful extensions: 1359
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)