Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_K02
         (771 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06323-1|CAA29639.1|  348|Homo sapiens protein ( Human MRL3 mRNA...    89   1e-17
CR456720-1|CAG33001.1|  348|Homo sapiens MRPL3 protein.                89   1e-17
BC003375-1|AAH03375.1|  348|Homo sapiens mitochondrial ribosomal...    89   1e-17

>X06323-1|CAA29639.1|  348|Homo sapiens protein ( Human MRL3 mRNA
           for ribosomal protein L3 homologue ( MRL3 =  mammalian
           ribosome L3 ).  ).
          Length = 348

 Score = 89.4 bits (212), Expect = 1e-17
 Identities = 55/170 (32%), Positives = 86/170 (50%)
 Frame = +3

Query: 258 KERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGL 437
           K   W D++L++EN  F+++++ D+ +AQ A +      P+ ++      W P + RVGL
Sbjct: 44  KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASK----LCPLKDEPWPIHPWEPGSFRVGL 99

Query: 438 IARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILV 617
           IA K+G  PLW KDG+K   TLLQV D HV+KY   E                K   + V
Sbjct: 100 IALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENC------------NGKMATLSV 147

Query: 618 GAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATH 767
           G + +            +  +G+ PK+ +  F ++  +A+  GTPLYA H
Sbjct: 148 GGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAH 197


>CR456720-1|CAG33001.1|  348|Homo sapiens MRPL3 protein.
          Length = 348

 Score = 89.4 bits (212), Expect = 1e-17
 Identities = 55/170 (32%), Positives = 86/170 (50%)
 Frame = +3

Query: 258 KERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGL 437
           K   W D++L++EN  F+++++ D+ +AQ A +      P+ ++      W P + RVGL
Sbjct: 44  KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASK----LCPLKDEPWPIHPWEPGSFRVGL 99

Query: 438 IARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILV 617
           IA K+G  PLW KDG+K   TLLQV D HV+KY   E                K   + V
Sbjct: 100 IALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENC------------NGKMATLSV 147

Query: 618 GAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATH 767
           G + +            +  +G+ PK+ +  F ++  +A+  GTPLYA H
Sbjct: 148 GGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAH 197


>BC003375-1|AAH03375.1|  348|Homo sapiens mitochondrial ribosomal
           protein L3 protein.
          Length = 348

 Score = 89.4 bits (212), Expect = 1e-17
 Identities = 55/170 (32%), Positives = 86/170 (50%)
 Frame = +3

Query: 258 KERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGL 437
           K   W D++L++EN  F+++++ D+ +AQ A +      P+ ++      W P + RVGL
Sbjct: 44  KSGTWWDEHLSEENVPFIKQLVSDEDKAQLASK----LCPLKDEPWPIHPWEPGSFRVGL 99

Query: 438 IARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILV 617
           IA K+G  PLW KDG+K   TLLQV D HV+KY   E                K   + V
Sbjct: 100 IALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENC------------NGKMATLSV 147

Query: 618 GAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATH 767
           G + +            +  +G+ PK+ +  F ++  +A+  GTPLYA H
Sbjct: 148 GGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAH 197


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,257,049
Number of Sequences: 237096
Number of extensions: 2389110
Number of successful extensions: 5273
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5267
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)