Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_J12
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    32   0.11 
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    27   2.4  
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||...    27   4.2  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   5.5  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   5.5  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   5.5  
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    26   7.3  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    26   7.3  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   7.3  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   7.3  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   7.3  

>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 19/65 (29%), Positives = 36/65 (55%)
 Frame = +3

Query: 330 EQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPNLLTWSEKEQIRHLATT 509
           E  E+D  K+ +   EHL++    + E++ Q+ KEKY K+N      +++ +  R L+T 
Sbjct: 85  EDEEAD--KIYQSVEEHLSKRRKSQREKQEQLQKEKYEKENPKVSSQFADLK--RGLSTL 140

Query: 510 QPDEW 524
             ++W
Sbjct: 141 TDEDW 145


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 345 DFYKVGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPNLLTWSEKEQIRHL 500
           DF +  + Y  HL   L    E  HQI+   YF +N+   +     E ++HL
Sbjct: 129 DFVETEDFY--HLVMELAEGGELFHQIVNFTYFSENLARHIIIQVAEAVKHL 178


>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 21/83 (25%), Positives = 41/83 (49%)
 Frame = +3

Query: 201 IVRNLRNRMRLDSFGPNPGLDKRIAAFKRDGFKVDDEDAEEYVEQSESDFYKVGEVYNEH 380
           + + +R+R +L+ FG NP  D+ I +  +D   V  E  +   EQS  +       Y   
Sbjct: 11  VSQKIRDRRKLEEFGQNP--DEEIESSLKD---VRQELQKLNEEQSRLEKNAQIPEYRVR 65

Query: 381 LNETLMGKYEQRHQIIKEKYFKQ 449
            +E  + + ++R +  +E++ KQ
Sbjct: 66  ESEAFLIRMQRRLESAEEEFEKQ 88


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 357 VGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPN 461
           +G +Y +HL   L  + +Q ++I   +   QN PN
Sbjct: 393 IGMLYRKHLQIILQHRQQQLNKIQNARMNSQNAPN 427


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 273 AAFKRDGFKVDDEDAEEYVEQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIKEKY 440
           A +K +  K  + D    V   E DF+KV +V NE ++       E     + +K+
Sbjct: 529 AEYKGESAKSSESDL--VVSDDEEDFFKVSKVANESISSNHEKLMESESDRLSKKW 582


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
 Frame = +3

Query: 363 EVYNEHLNE--TLMGKYEQRH----QIIKEKYFKQNMPNLLTWSEKEQIRHLATTQPDEW 524
           +++N ++ +  TL+GK  Q      ++ KE  F Q+    L   E E++RHLAT+  +++
Sbjct: 347 DIHNVNIKQITTLIGKMSQVQIECKRLRKENLFLQSERTHLL-RELEELRHLATSAKEDF 405

Query: 525 TP-EKL 539
              EKL
Sbjct: 406 VKVEKL 411


>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
 Frame = +3

Query: 3   AGRCLWFLSNQQTNGNFGFI-VLFSNKLNAC-IVESYIQAHELQLLIIIPEXKMFTARLR 176
           AG   W   NQ  N  F       S +L    + +SYI A      + I   K+   R+ 
Sbjct: 111 AGTVFWQWMNQSVNVAFNSANANKSTQLTLPQMTKSYIYAVSASCGVAIGLNKI-VPRMN 169

Query: 177 HLCPSAKIIVRNLRNRMRLDSFGPNPGLDKRIAAFKRDGFKVDDEDAEEYVEQSESDFYK 356
            L  S+K ++  L     + S G       R     R G  V D++ E   +  ++ FY 
Sbjct: 170 FLSSSSKAVLGRLTPFAAVASAGVLNVFLMRGEEL-RQGIDVFDKEGESLGKSKKAAFYA 228

Query: 357 VGE 365
           VGE
Sbjct: 229 VGE 231


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +3

Query: 12  CLWFLSNQQTNGNFGFIVLFSNKLNACIVESYIQAHELQLLIIIPEXKMFTARLRHL--- 182
           C + ++N  +  N    ++ +NK N  +   Y Q H +Q  +++      T+R  H    
Sbjct: 136 CNFNMANDASKENETPYMVLNNKFNPVLTTEYTQQHLVQCKMVLENH--ITSRFPHFYTK 193

Query: 183 CPSAKIIVRNL 215
            P   ++  N+
Sbjct: 194 LPDVSLVPNNM 204


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 162 TARLRHLCPSAKIIVRNLRNRMRLDSFGPNPGLDKRI 272
           T +  H CPS+  +++  R    L +FG  P  D  +
Sbjct: 35  TRKFHHACPSSSKVLKYFRITGCLINFGKQPANDHHL 71


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -3

Query: 631 SCRAMRCSVAGFQTCLSNFFTTGTVTGKLSANFSGVHSSGCVVAKCLICSFSLQV 467
           + R  RC      +CL  F  T T     +A  SG     C    C IC  S+++
Sbjct: 224 AARMSRCGHVYCFSCLLRFVETPTAAEVKAAETSGTKIVKCGHRSCPICWDSIRL 278


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 294 FKVDDEDAEEYVEQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPNLLTW 473
           F V +  A  Y   S S F K  +  +      L G  ++RHQ +K +   Q   NLL +
Sbjct: 210 FSVSESIANSYSNSSISAFTKWFDRVDA---SELPGSEKERHQSLKLQSQSQTSKNLLAF 266

Query: 474 SEKEQ 488
           ++ ++
Sbjct: 267 NDAQK 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,189,336
Number of Sequences: 5004
Number of extensions: 66107
Number of successful extensions: 242
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)