Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_J12
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0277 + 23780779-23781103,23781954-23782363,23782487-237830...    31   1.4  
11_01_0782 + 6543906-6544702,6545717-6547850                           29   4.4  
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379...    29   5.8  
02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475     29   5.8  
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076...    28   7.6  
06_02_0266 - 13593346-13594151,13594425-13594743                       28   7.6  

>05_05_0277 +
           23780779-23781103,23781954-23782363,23782487-23783016,
           23785904-23785991
          Length = 450

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 303 DDEDAEEYVEQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIK 431
           DD+  EE  E+ E D    G   N+HL E  +G+YE R   IK
Sbjct: 74  DDDHHEESAEEEEEDNQLQG--LNKHLAEYRIGQYEIRGATIK 114


>11_01_0782 + 6543906-6544702,6545717-6547850
          Length = 976

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/27 (40%), Positives = 22/27 (81%)
 Frame = +1

Query: 283 NETASKLTTKMLKSMSNNRRVIFIKLV 363
           + +A+KLTT +L ++SN R++ ++KL+
Sbjct: 778 SSSATKLTTGLLSALSNLRKLKYLKLI 804


>03_05_0804 +
           27835508-27835805,27836372-27836421,27837306-27837998,
           27838077-27838388,27838528-27838698
          Length = 507

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 183 CPSAKIIVRNLR--NRMRLDSFGPNPGLDKRIAAFKRDGFKVDDEDAEEYVEQSESDFYK 356
           C S K+I   LR  +   +D+FG       R AA + +GF+   +  +E VE+ E    +
Sbjct: 219 CYSNKVIRNGLRVSDLRHMDTFGAKLNTLLRDAALRFEGFEYSTKTLKEEVEKYEKFAER 278

Query: 357 VG 362
           +G
Sbjct: 279 LG 280


>02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475
          Length = 392

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 353 IKITLRLFDILFSIFVVNFEAVSFECS-NSLVQTWIWSERV*PHSVSKVTDN 201
           +++  R FD+ F  F  NF A+   CS + L    I++ R+  ++++ + DN
Sbjct: 222 LRLNHRWFDVQFDEFRDNFHALGIACSMHRLRHLQIFANRLRNNALAAILDN 273


>11_06_0211 +
           21305535-21305895,21306512-21306761,21307543-21307652,
           21308836-21309067,21310233-21310603,21311434-21311507,
           21311727-21311880,21312251-21312434,21313066-21313291,
           21313704-21314135,21314399-21314456,21314748-21314829,
           21315350-21315421,21316594-21316737,21317379-21317457,
           21318023-21318105,21318198-21318252,21318488-21318778
          Length = 1085

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/72 (19%), Positives = 30/72 (41%)
 Frame = +3

Query: 309 EDAEEYVEQSESDFYKVGEVYNEHLNETLMGKYEQRHQIIKEKYFKQNMPNLLTWSEKEQ 488
           E+   + E+      +  E +   L E  +  Y    + + +  +      L+T +  E+
Sbjct: 707 ENNMSFTEEPLKHIARFIESFESELKELWL-VYRNEGRSLSKLIYTAEETKLVTGNNNER 765

Query: 489 IRHLATTQPDEW 524
           +RH+   QP +W
Sbjct: 766 VRHIQVLQPSKW 777


>06_02_0266 - 13593346-13594151,13594425-13594743
          Length = 374

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/42 (26%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +3

Query: 294 FKVDDEDAEEYVEQSESDFYKVGEVYNEHL--NETLMGKYEQ 413
           F  DD   + +VE + ++ ++V E+  +HL   +T++G++++
Sbjct: 194 FSTDDAPIDAFVEDNTAENHEVKEMSRDHLVQKDTVIGEHQE 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,932,256
Number of Sequences: 37544
Number of extensions: 360114
Number of successful extensions: 943
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)