Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_J10
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0516 + 29694631-29695182                                         30   1.3  
09_04_0385 + 17167174-17167440,17173321-17173962                       28   3.8  
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209...    27   6.7  

>02_05_0516 + 29694631-29695182
          Length = 183

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 143 WFGRRSKP-PS--AVAGAFSRAWWXWQHKYVQPKKVGMA 250
           W  RRSK  PS  A AG   + WW W   ++  KK G A
Sbjct: 67  WAFRRSKSAPSLGAFAGGPLKRWWDWGVGWLMSKKPGFA 105


>09_04_0385 + 17167174-17167440,17173321-17173962
          Length = 302

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 214 LPXPPGSTESSGHGRRRLAAATEPRTD 134
           LP  P +T SSG+ R   +A++ PR D
Sbjct: 146 LPPEPSATTSSGNDRSSSSASSPPRAD 172


>06_03_0914 +
           25920277-25920405,25920783-25920810,25920890-25920990,
           25921356-25921479,25921793-25921903,25922222-25922397,
           25922766-25922848,25922935-25923007,25923630-25923695,
           25923776-25923818,25924600-25924739,25924878-25925090,
           25925397-25925481,25925558-25925852,25926855-25927110,
           25927237-25927450,25927701-25927912,25928054-25928203
          Length = 832

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 123 SXTXSVRGSVAAASLRLPWPELSVEPGGXGNISTYNLRRLAWLHS 257
           S    +RG+V A S R     L    G  G IS +NL +   LHS
Sbjct: 148 SFNHQIRGAVTALSFRTDGQPLLASGGSSGVISIWNLEKRR-LHS 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,103
Number of Sequences: 37544
Number of extensions: 199769
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)