Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_J05
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    82   8e-17
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    28   1.8  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.3  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.1  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   7.2  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   7.2  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   9.5  

>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 82.2 bits (194), Expect = 8e-17
 Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 19/206 (9%)
 Frame = +3

Query: 240 EKDRIEHLIRGHYAVLASNNVGLKGSLVDELGYPRDDIDVYEVRHARHKIICLQNDHKKV 419
           +K  IE+ +     VL    V +   L+ E G+PR DIDV  +R ARH+II L+NDH+++
Sbjct: 10  KKREIENRLNELEGVLLKERVTMDTPLLTEDGFPRSDIDVPSIRTARHEIITLRNDHREL 69

Query: 420 MQLIERGIAKVYEDLIDSPGIDSEEINSCLNGYPV-FKK-DETVND-----------PTF 560
              I++ + KV+          ++E        P+ F   +  +ND             F
Sbjct: 70  EDQIKKVLEKVFSGFSKESLAANDETKLAQEADPLNFNAANYNMNDIISRSKILGRVKPF 129

Query: 561 ATISFVDKGSPAEEAGLRAHDELVQFGSVNYKNFKDVSQIMRIVSHSINYGITV-IVRRE 737
             +  V   SPA+EAGL   DEL     V+ +N   +S++   +S+++N  + V ++R  
Sbjct: 130 CVVDSVAVESPAQEAGLCIGDEL-----VHVQNVTSLSELPTFISNNVNKTLDVLLIRGY 184

Query: 738 NAD-----LTFELVPXPWAKPGLLGC 800
           +AD     +  +L P  W  PGLLGC
Sbjct: 185 SADGSTNLVELKLTPHKWQGPGLLGC 210


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +3

Query: 441 IAKVYEDLIDSPGIDSEEINSCLNGYPVFKKDETVNDPTFATISFVDKGSPAEE 602
           + K  +D+ D+P +        +  +P+FKK +   D  F+  +F   G+P  E
Sbjct: 189 VLKNMDDIFDTPYVYESPAEPDMFSFPIFKKPDDEEDYQFSD-NFDAYGAPRSE 241


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +3

Query: 462 LIDSPGIDSEEINSCLNGYPVFKKDETVNDPTFATISF 575
           ++ +PG D + I +C+    +   +ET+ +  F T+ +
Sbjct: 666 IMQNPGNDWDMIRACIGSKEILVPEETIKNILFTTLEY 703


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 657 NFKDVSQIMRIVSHSINYGITVIVRRENADL 749
           NFK + + +   SH IN  +T ++ +ENA +
Sbjct: 26  NFKHILRHLEHESHVINSTLTTLISQENASM 56


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 574 KLIVAKVGSLTVSSFLKTG*PFKHEFISSLSIPGLSIKSS 455
           KL +AK  S+T+ S   +     H F   LS+PG  IKS+
Sbjct: 703 KLDLAKANSITLKSEPSSA-VSTHSFEVHLSMPGTQIKSA 741


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = +3

Query: 393 CLQNDHKKVMQLIERGIAKV-YEDLIDSPGIDSEEINSCLNGYPVFKKDETVNDPTFATI 569
           C  +D  K +  + + + K    +   S  + +E   SCL  YP+   +E      F   
Sbjct: 316 CSSSDDAKPITFVTKNLRKFPIPEWRSSLEVQAESEQSCLPLYPLLPVEEVEGMKKFVQT 375

Query: 570 SFVDKGSPAEEAGLRAHDE 626
              D   P  +  +RA +E
Sbjct: 376 MLYDSIYPFMQRCVRAWEE 394


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 528  KKDETVNDPTFATISFVDKGSPAEEAGLRA--HDELVQFGSVNYKNFKDVSQIMRIVSHS 701
            +KD      T +T+S   K   +E   L++  +D+  +  SVN + FK+VSQ +   +  
Sbjct: 889  EKDLEAATKTASTLSKELKTVKSENDSLKSVSNDDQNKEKSVNNEKFKEVSQALAEANEK 948

Query: 702  IN 707
            +N
Sbjct: 949  LN 950


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,270
Number of Sequences: 5004
Number of extensions: 63121
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)