Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_J03
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0111 + 5381779-5382117,5382775-5382798 52 7e-07
07_03_0548 + 19349943-19350290,19350372-19351100 51 1e-06
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 45 6e-05
03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688... 32 0.48
06_03_1032 + 27029698-27029785,27030640-27031275,27031739-270319... 30 1.9
07_01_1103 + 10141766-10143583 29 3.4
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786... 28 7.8
>10_02_0111 + 5381779-5382117,5382775-5382798
Length = 120
Score = 51.6 bits (118), Expect = 7e-07
Identities = 23/60 (38%), Positives = 35/60 (58%)
Frame = +1
Query: 478 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSL 657
Q+ L P L+D IV +G TV E+GPG G +T+ +++ K +V +E DPR + L
Sbjct: 40 QHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVELDPRMVLEL 99
>07_03_0548 + 19349943-19350290,19350372-19351100
Length = 358
Score = 51.2 bits (117), Expect = 1e-06
Identities = 26/97 (26%), Positives = 47/97 (48%)
Frame = +1
Query: 451 KLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIE 630
+ R + Q+ L PR++D IVR + V EVGPG G +T ++ ++ +E
Sbjct: 34 RFRLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVE 93
Query: 631 KDPRFLPSLELLADACRDKVDVDIITGDILKTDLSQF 741
DPR + ++ DA + +I D ++ + +F
Sbjct: 94 IDPRMVDAVTARVDALGLAHKLTVIRADAVEAEFPEF 130
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 45.2 bits (102), Expect = 6e-05
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Frame = +1
Query: 478 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSL 657
+N+++ ++ +++V A+G + V E+GPG G +T +++ A + +EKD
Sbjct: 25 ENYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALL-DAGATVFAVEKDKHM---A 80
Query: 658 ELLADACRDKVDVDIITGDILKTDL-SQFIP-NDAKVHWLDPPPPVHLIGNLPFXVS 822
L+ D + II DI K ++ S F+P + K H V + NLPF VS
Sbjct: 81 TLVNDRFGSTEQLKIIEEDITKFNVRSHFLPFLEEKSHHTRKYAKV--VSNLPFNVS 135
>03_01_0006 +
65675-65808,66385-66457,68290-68526,68648-68785,
68871-69005,69131-69310,69495-69701,69821-69943,
70240-70359,70758-70880,72067-72171,72254-72398,
73443-73607,73669-73907,74452-74484,74977-75058,
75200-75360,75739-75951,76789-76971,77051-77220,
77375-77474
Length = 1021
Score = 32.3 bits (70), Expect = 0.48
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 640 RFLPSLELLADACRDKVDVDIIT-GDILKTDLSQFIPNDAKVHWLDP 777
R P ++L D D++D ++ GDI+ L IP DA++ DP
Sbjct: 188 RLAPKAKVLRDGTWDELDASLLVPGDIISVKLGDIIPADARLLEGDP 234
>06_03_1032 +
27029698-27029785,27030640-27031275,27031739-27031993,
27032451-27032605,27032704-27032783,27032891-27033026,
27033228-27033377,27033474-27033641
Length = 555
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 355 PENTAVIMAVAKTALQIRLPPLPSIKDVIKLYKLRALRE-LSQNFLMEPRLIDKIVRASG 531
PE A I+AVA + PS+K V++ L+ RE L + P+L+ ++ SG
Sbjct: 474 PEEMAHILAVASMCIHHSSSSRPSMKSVVRF--LKGDRESLEMMQMQRPKLMKPLMFDSG 531
Query: 532 NIQNHT 549
+ +++T
Sbjct: 532 DSEDYT 537
>07_01_1103 + 10141766-10143583
Length = 605
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = -1
Query: 785 GGGGSNQWTFASFGIN*----LKSVFKISPVIMSTSTLSRQASAKSSNDGKNRGSFSIKT 618
G GS+ W + + S ++ V S R+ +S DG R + ++
Sbjct: 130 GERGSSGWVMHEYAVTSPAELAASPIRLYRVRFSGHGKKRKREPQSGEDGVGRARAAPQS 189
Query: 617 SFLGACLIIDRVIPPGPGPTS 555
+ L+ +RV+PP P P S
Sbjct: 190 AGTETALLEERVMPPQPAPQS 210
>01_01_0994 -
7861310-7862119,7862378-7862498,7862718-7862901,
7862975-7863070,7863428-7863476,7863555-7863596,
7863684-7863836,7865631-7865705,7866462-7866587
Length = 551
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -1
Query: 665 KSSNDGKNRGSFSIKTSFLGACLIIDRVIPPGPGPTSQT 549
KSS G GSF K+ G+ ID IP PGP S T
Sbjct: 377 KSSGQGGFFGSFFRKSLKKGSFHDIDPGIPTTPGPQSAT 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,594,074
Number of Sequences: 37544
Number of extensions: 449700
Number of successful extensions: 1147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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