Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_I24
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 37 0.003
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 35 0.011
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 33 0.033
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 33 0.058
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 33 0.058
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 31 0.18
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 28 1.2
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 28 1.6
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 27 2.2
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.8
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.8
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 27 3.8
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 26 6.6
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 6.6
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.8
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 37.1 bits (82), Expect = 0.003
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Frame = +1
Query: 520 LVRQGVPHHFRGIVWQLLAG-----VDTSPE-KKLYASYIKAKSACEKVIRRDIARTYPE 681
LVR +P+ RG +W+L +G ++ S E L Y S + I +D+ R+ PE
Sbjct: 216 LVRIELPNKLRGEIWELTSGSMYFRLENSDEYDHLLKVYSGQTSFSLEEIEKDLGRSLPE 275
Query: 682 HDFFKEKDGLGXESLFNVMKAYS 750
+ ++ ++G+ +L NV+ A+S
Sbjct: 276 YPAYQNEEGI--NALRNVLVAFS 296
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 35.1 bits (77), Expect = 0.011
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +1
Query: 493 KRRNQWVRDLVRQGVPHHFRGIVWQLLAGVDT--SP--EKKLYASYIKAKSACEKVIRRD 660
K+R R+LV+ GVP ++ VW +G SP ++L + + +SA I D
Sbjct: 491 KKRWHKFRELVKNGVPLCYKAKVWLECSGAYQLHSPGYYEELLSRTDEVESASVAQIDMD 550
Query: 661 IARTYPEHDFFKEKDGLGXESLFNVMKAYS 750
I RT ++ FF K G G L ++ AYS
Sbjct: 551 INRTMAKNVFFGGK-GPGIPKLRRILVAYS 579
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 33.5 bits (73), Expect = 0.033
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +1
Query: 499 RNQWVRDLVRQGVPHHFRGIVWQLLAGVDTSPEK--KLYASYIKA----KSACEKVIRRD 660
R+ + +R+G+P +RG W +G ++ KLY + + K + +I RD
Sbjct: 289 RSAKTQRFIRKGIPPEYRGNAWFYYSGGYELLQRNPKLYETLWRCACIKKPSDSDLIERD 348
Query: 661 IARTYPEHDFFKEK 702
+ RT+P++ F+ K
Sbjct: 349 LYRTFPDNVHFRHK 362
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 32.7 bits (71), Expect = 0.058
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = +1
Query: 520 LVRQGVPHHFRGIVWQLLAG--VDTSPEKKLYASYIKA--KSACE--KVIRRDIARTYPE 681
LV+ G+P++ R +W+ +G K YA I + + CE + I +D+ R+ P+
Sbjct: 212 LVQSGIPNNLRADIWETCSGSLFPRWKSKGFYAKNIDSVINNRCEYSEEIEKDLTRSLPD 271
Query: 682 HDFFKEKDGLGXESLFNVMKAYS 750
+ ++ G+ +L ++ YS
Sbjct: 272 YPAYQSPTGI--NTLRRILLFYS 292
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 32.7 bits (71), Expect = 0.058
Identities = 19/79 (24%), Positives = 39/79 (49%)
Frame = +2
Query: 194 LRSSIQTQTAESRQVKLSRRPTGRFSPSWRKKTVVSRLMRRTPRSLPSTVGRAPTHH*YP 373
L++S+++ ++ Q S+R + P W VS+L++ TP ++ + T +P
Sbjct: 158 LKTSLRSTVEKTFQELSSKRKRTKLQPKWATDDAVSQLLQATPSTILENLETESTTSFFP 217
Query: 374 SLPPQAQVMRSKRAQLLGL 430
S + V+ + +LL L
Sbjct: 218 SPENSSFVLCLHKDELLCL 236
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 31.1 bits (67), Expect = 0.18
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Frame = +1
Query: 445 LWSLWGR-LVSNWESEWKRRNQWVRDLVRQGVPHHFRGIVWQLLAGVDTSPEKKLYASYI 621
L ++W R ++ NW K + RQG+P RG VW+ G + K Y S+
Sbjct: 187 LVNVWEREILRNWPDALKSSRY--AGIWRQGIPSRVRGRVWEKAIGNNL---KLDYQSFF 241
Query: 622 KAKSACEKVIRRDIARTYPEHDFFKEKDGLGXESLFNVMKAYSL 753
A++ +K + A + F+E L + M YSL
Sbjct: 242 NARANAQKREAAEKAEQMNNANQFREDVCALELDLQSTMPHYSL 285
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 73 IIVLRINIGVSVPGSCEESNYLINLVLF*YLMTDRASTEKSPELNPNADCRIPTS 237
++ R+N+ SV G E +I + + + +S SP + PNA P+S
Sbjct: 394 LLASRLNLNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSS 448
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 514 RDLVRQGVPHHFRGIVWQLLAGVDTSPEKKLYASYIKAKSACEKVIRRDIARTY-PE--H 684
R+L+ H +VW+ ++ + + Y+S +K IR+D+ RT+ PE
Sbjct: 604 RNLILMHNSHTVHTVVWKTISSWTSYDYEMQYSSLSIKNCDSDKAIRKDLDRTFAPEILS 663
Query: 685 DFFKEKDGL 711
FF + L
Sbjct: 664 HFFSNRQQL 672
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Frame = +1
Query: 511 VRDLVRQG---VPHHFRGIVWQLLAGVDTSPEKKLYASYIKAKSACEKVIRRDIARTY-- 675
+ +L++Q +P R +VWQ L + + LYA+ ++ + IR+ I
Sbjct: 160 ILELIKQNNFCIPSPCRKLVWQSLVSAERNELLTLYATLSTTNNSLDSSIRKIIRMQSFR 219
Query: 676 -PEHDF---FKEKDGLGXESLFNVMKAYSL 753
P F + + ES+F+V+ A++L
Sbjct: 220 GPLEPFKYSSTTRHKVSTESIFHVLHAFTL 249
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 614 HILRRNQPARRSYVVTSLVLI--PNTI--SSKRRMASAXSL 724
HIL PA RSY++T L I T+ SS +ASA SL
Sbjct: 99 HILHPPNPATRSYMLTQLFQINTHGTVVNSSHETIASATSL 139
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 455 SGVASSATGNRNGNVEINGS 514
SG+AS A GNR GN+ N S
Sbjct: 72 SGLASGAFGNRTGNMNRNTS 91
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 26.6 bits (56), Expect = 3.8
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Frame = +1
Query: 472 SNWESEWKRRNQWVRDLVRQGVPHHFRGIVWQLLAG------VDTSPEKKLYASYIKAKS 633
SNW+S ++ + V++ + +R + +G ++TS + K + Y
Sbjct: 56 SNWQSVLEKHRKTYTSFVQELLIDPWRKLTLHEESGENSDHPLNTSDDSK-WKEYFDDNQ 114
Query: 634 ACEKVIRRDIARTYPEHDFFKEKDGLGXE-SLFNVMKAYSL 753
E+ I +DI RT P+ FF+ K + + S+ NV + S+
Sbjct: 115 ILEQ-IDKDIRRTLPDLSFFQGKSEINKKPSVNNVSENISV 154
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 242 VSLVGIRQSAFGLSSGDFSVEARSVIKYQN 153
+S GI+QS FG +G V+ V+K N
Sbjct: 460 ISFGGIKQSGFGKEAGRLGVQEFMVVKEIN 489
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 13 EFFKFCQLGGSNIYFIYEKKIIVLRINIGVSVPGSCEESNYLINLVLF*Y 162
+FF FC G + +Y KK+I L + V G+ +E N + N VL Y
Sbjct: 555 DFFVFCNSFGISSSKLYIKKMIHL-----IWVKGTSDEGNNIQNHVLSCY 599
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 215 QTAESRQVKLS-RRPTGRFSPSWRKKTVVSRLMRRTPRSLPSTVGRA 352
Q E R VK RRP R +P++ + V+ MRR + +T GRA
Sbjct: 347 QPWEKRSVKPEIRRP--RLNPNFFRVFVLEAQMRRAGKLSANTAGRA 391
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,029
Number of Sequences: 5004
Number of extensions: 64218
Number of successful extensions: 181
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -