Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I23
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    30   0.093
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   3.5  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   3.5  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 29.9 bits (64), Expect = 0.093
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 184 FAIIMFYIIAIKFKDSNN*IKYFSNQVKYFSDFSYYFAR*LFKITY 47
           F  + F+ + +    S+N   Y+SN+ K F D+  Y+   LFK  Y
Sbjct: 163 FYYLCFWFLGLYIYRSSN---YWSNEEKLFEDYPQYYMSPLFKAYY 205


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 17  RSFEASCKFIICNFK*LSSKII 82
           ++F A CK  +CNF+    +II
Sbjct: 619 KTFRAMCKCSVCNFERWKDRII 640


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 102 SILVTSHIILLDNYLKLHIMNLQLASKDLLDT 7
           SIL+T+ +  L+ YLK H+ + +   K  L++
Sbjct: 217 SILITNSLGTLNAYLKQHVKSYKQREKTRLES 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 833,518
Number of Sequences: 5004
Number of extensions: 12257
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)