Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I22
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    30   0.43 
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   5.4  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   7.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   7.1  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   9.4  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +2

Query: 272 NFQYLMDPNSYKYLWLCLL----FSCQVILCKEISTP 370
           +F+YL DP++Y +L LC++     + +   CK ++ P
Sbjct: 382 SFEYLGDPSTYNHLKLCVILLKRLTAEKYFCKRLNKP 418


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 448 KPVIEGVCQNFTLLTLIQYINIFIG*WCTNFLTQYYLTT 332
           K VI+     FT    +  I  F G WC+  + Q+YL T
Sbjct: 488 KLVIKSYATAFTWTFALVAIIAFAGFWCSLRIKQFYLHT 526


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 518  ARSEVRLVEIQEGLCSELKANKDQCYSLADVAENVLXNWYYSEDHDTV 661
            A  E  + ++Q+GLC +  +NK  C   +      L N  Y  D  T+
Sbjct: 1298 ATMENLISQLQKGLCDDSLSNKTDCTESSKQTIETLMN--YENDKQTL 1343


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 707 DSSFVISEYTAMYTN*QYHDLHCNTSFXIHFQLHL 603
           D+ F +SE     T     D+H   SF ++  LH+
Sbjct: 617 DTGFSLSESVPFATKEWIQDMHAENSFNMYKNLHI 651


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 365 TPSTDKNINVLNECQQCKVLTDSFNYWFKKTSRGKYEGGDVAWEEAKLKTYARSEV 532
           TPST  +    N  +   V +D FN    K  R  Y G D  WE   +   A +++
Sbjct: 223 TPSTAYHRTGYNGRKYNLVFSDEFN----KEGRSFYSGNDQFWEAVNIHYAATNDL 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,379
Number of Sequences: 5004
Number of extensions: 63493
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)