Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I18
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.5  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   6.5  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +3

Query: 261 FISRYILKNANI---YGDNCDFTVMKKRK 338
           F  R I KNA     YG+NC+  +  +RK
Sbjct: 211 FFRRSITKNAVYQCKYGNNCEIDMYMRRK 239


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 498 NIMQMNNIPFSXSLTAPAENNMPVWELQQPNITGVQESPFR 620
           N++   ++PF          N+ V +L   NIT V +  FR
Sbjct: 204 NLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITSVAKQFFR 244


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 375  VPIKPKSVPAPAGNKMP 425
            VP+K  +VP P+G+  P
Sbjct: 1104 VPLKGTAVPPPSGSSGP 1120


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 315  FTVMKKRKANSNLIRVTNNI 374
            F +  K+K ++  I+V+NN+
Sbjct: 1524 FVIEHKKKTSTEWIQVSNNV 1543


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 178 NYNPRCFCYCLRVILI 131
           NYN    CY LR++LI
Sbjct: 48  NYNFTKKCYFLRMVLI 63


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,174
Number of Sequences: 336
Number of extensions: 3036
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)