Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I18
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    32   0.080
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    30   0.32 
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    27   3.0  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   4.0  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    26   4.0  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    26   5.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   5.2  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    25   9.1  

>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 31.9 bits (69), Expect = 0.080
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
 Frame = +3

Query: 333 RKANSNLIRVTNNIVPIKPKSVPAPAGNKMPI-WEPRQPNAEKTHMQAQTSAISNP---N 500
           R  +SN    TN+I+   P    +PA + +PI      P +EK   Q  T ++++     
Sbjct: 143 RSFSSNSSSDTNSILYAGPTFTHSPAASNLPIPTFLHSPVSEKAEWQPPTGSVNSNMPFQ 202

Query: 501 IMQMNNIPFSXSLTAPAENNMPVWELQQPNITGVQES 611
             Q +++P + S  A   N  P+     P++  +Q++
Sbjct: 203 FHQSSSVPSTPSEVAMGHNFCPM-SRNDPSLQSIQQT 238


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 435 PRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSXSLTAPAENN 560
           PR+   E T   + +S I++P  +Q +  PF  S+ A   NN
Sbjct: 670 PRKNTEESTSSSSFSSLITSPASLQYDENPFKQSVVAELNNN 711


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 378 PIKPKSVPAPAG-NKMPIWEPRQPNAEKTHMQA--QTSAISNPNIMQMNNIPFSXSLTA 545
           P  P+S   PA     PI  PR+ +   TH+ A   T+   + N+ +    P+S + TA
Sbjct: 62  PTSPQSAYVPATVYTSPIGSPRRGSVRYTHVMAHPNTTTTVSENLPEEVPPPYSPAATA 120


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 386 LYRYNIICNSYEVRICFAFFHYCEITVVTVNICVLQDIPTNKEILSIL 243
           LY    + +  E+R+      +CE  V T +I    D P  K  ++++
Sbjct: 654 LYDLRTLYSEIEIRVSDPVARFCETAVDTSSIKCFSDTPNKKNRITMV 701


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 588 WAVEAPTPAYCSLQVQSNLXRKGYCSSA*YWDLISLRSELACVFFRHSVDEAPKS-ASCS 412
           W V A   A+   Q  ++      CS +  W  +SL S   CV+     D A K+    S
Sbjct: 224 WNVAAECDAW---QANNSELSSSICSISANWSTLSLLSTEGCVYAFGRCDRAQKAHTKAS 280

Query: 411 QLVQ 400
            +VQ
Sbjct: 281 DIVQ 284


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 400 GTLLGFIGTILFVTLMRLEFALRFFITVKSQLSP*IFAFFKIYLLIKK 257
           G L GF G   F   +  + +L          SP +F++F IY+ IKK
Sbjct: 539 GILHGFAG--YFEATLYKDISLSIMPATMEAKSPDMFSWFPIYMPIKK 584


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 378 PIKPKSVPAPAGN--KMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSXSLTAP 548
           P  P+S PA + N   +P W+  QP         Q SA+   N++   N PF    +AP
Sbjct: 444 PAAPQSAPALSMNPSSLPPWQ--QPT--------QQSAVQPSNLVPSQNAPFIPGTSAP 492


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 285 NANIYGDNCDFTVMKKRKANSNLIRVTNNIVPIKPKSVPAPAGNKMP 425
           N +I  DN   +  +K    S  I++      + PK  P+P   K+P
Sbjct: 207 NGHIESDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPEVPKLP 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,601
Number of Sequences: 5004
Number of extensions: 50464
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)