Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P15_F_I17
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0295 - 19235755-19235949,19236330-19236548,19237297-19237503 31 0.44
01_05_0746 + 24856362-24856710,24856799-24856986 29 1.4
03_05_1125 + 30576951-30577010,30577163-30577285,30577393-305775... 28 2.4
02_03_0050 + 14433013-14433303 27 5.5
11_01_0196 - 1547373-1549859 27 7.2
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 27 7.2
08_02_0720 + 20394898-20395284,20396062-20396202,20396304-203966... 27 7.2
08_01_0695 + 6148873-6150051 27 7.2
07_03_1031 - 23389263-23389541 27 7.2
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 27 7.2
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887... 27 7.2
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580... 26 9.5
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 26 9.5
02_05_0486 - 29423756-29423965,29425424-29425528 26 9.5
>06_03_0295 - 19235755-19235949,19236330-19236548,19237297-19237503
Length = 206
Score = 30.7 bits (66), Expect = 0.44
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +3
Query: 63 PELNQC-HFVARSDTVPLRFAWVCIRR---PPSWSPLGRGCCQLQN 188
P NQC FVA+ PL+ W +RR P + P R C +N
Sbjct: 50 PSSNQCTSFVAKHIKAPLQTVWSLVRRFDQPQLFKPFVRKCVMREN 95
>01_05_0746 + 24856362-24856710,24856799-24856986
Length = 178
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 90 ARSDTVPLRFAWVCIRRPPSW 152
ARSDT P A VC+RR P+W
Sbjct: 84 ARSDTWPC-LAGVCVRRKPAW 103
>03_05_1125 +
30576951-30577010,30577163-30577285,30577393-30577552,
30577635-30577702,30577928-30578473,30578725-30579312,
30579392-30579604,30580227-30580388
Length = 639
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 129 RPTRNAMGLYPTWRQNGTGLVPELHHTNTSP 37
RPT N MG++ +G GL +HT P
Sbjct: 313 RPTANLMGMHAQIPSSGMGLTSPSYHTRMYP 343
>02_03_0050 + 14433013-14433303
Length = 96
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 153 SPLGRGCCQLQNGFVERYHVPIYLVLSNCKF 245
S LGR Q Q G V R H P+Y+ S C++
Sbjct: 19 SSLGRR--QQQQGAVPRGHFPVYVGESRCRY 47
>11_01_0196 - 1547373-1549859
Length = 828
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -2
Query: 178 WQQPRPSGDQDGGRRMQTHAKRNGTVSDLATKWHWFS 68
W P+ GG R++ H N V D K W S
Sbjct: 120 WNSSTPAAGGSGGARVRLHDSGNLVVEDAGGKTLWQS 156
>09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/47 (25%), Positives = 18/47 (38%)
Frame = -2
Query: 172 QPRPSGDQDGGRRMQTHAKRNGTVSDLATKWHWFSSGATPHKHVTTE 32
QP G+ D R+ ++ + + WFS G P H E
Sbjct: 983 QPVNKGNSDAADRLSEQMRKTFRIEAVGLMSLWFSYGTMPMVHFVVE 1029
>08_02_0720 +
20394898-20395284,20396062-20396202,20396304-20396669,
20397146-20397388,20397474-20397566,20397892-20398077,
20398259-20398471
Length = 542
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 53 WCSSGTKPVPFCRQVG 100
WC+SG +PFC+ +G
Sbjct: 492 WCNSGADRLPFCQILG 507
>08_01_0695 + 6148873-6150051
Length = 392
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/44 (27%), Positives = 16/44 (36%)
Frame = +2
Query: 32 FCGDVFVWCSSGTKPVPFCRQVGYSPIAFRVGLHPSAAILVAAG 163
FC F S+ P P CR G+ + HP +G
Sbjct: 49 FCSACFRSLSAAASPCPSCRAAGFCSPSCAAASHPRLLCTALSG 92
>07_03_1031 - 23389263-23389541
Length = 92
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 202 RSTNPFCSWQQPRPSGDQDGG 140
R+ P+CSWQ S D GG
Sbjct: 3 RTCLPWCSWQLAAASADNSGG 23
>06_03_1306 +
29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 8 PMIDQSSCFCGDVFVWCSSGTKPVPFCRQVGYSP 109
P+ SS FC +F S T+P CRQ+G P
Sbjct: 96 PVYSNSSTFCTSLFSSSSMETEP---CRQLGTLP 126
>03_02_0652 -
10188076-10188243,10188353-10188541,10188633-10188750,
10188841-10189491,10189870-10190033,10190137-10190574
Length = 575
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 115 VSRGSASVGRHLGRRWGVVAAS 180
VS G AS+GRHL RR V S
Sbjct: 9 VSAGEASLGRHLARRLVQVGVS 30
>08_01_0673 -
5805218-5805349,5805936-5806026,5806416-5806471,
5806571-5806852,5806924-5807057,5807088-5807163,
5807247-5807747,5808454-5809037,5809579-5809597
Length = 624
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 81 GTGLVPELHHTNTSPQKHDD 22
G G V E+ HT PQ+H D
Sbjct: 3 GGGFVNEMRHTGKRPQQHRD 22
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 119 RVGLHPSAAILVAAGAWLLPATKWVCRTVSCTYL 220
R LHP A LVA LL + W C + S L
Sbjct: 55 RPSLHPLPASLVAILPLLLTSRNWQCSSASVAAL 88
>02_05_0486 - 29423756-29423965,29425424-29425528
Length = 104
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +3
Query: 117 FAWVCIRRP-PSWSPLGR 167
FAW+C+R P P SPL R
Sbjct: 83 FAWLCLRLPLPGCSPLER 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,930,530
Number of Sequences: 37544
Number of extensions: 204371
Number of successful extensions: 701
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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