Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I14
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0206 - 21580240-21580467,21580544-21580591,21581533-215823...    29   1.9  
09_02_0580 + 10884012-10884081,10884173-10884419,10884472-108847...    29   2.5  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   2.5  
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    27   7.7  

>09_06_0206 -
           21580240-21580467,21580544-21580591,21581533-21582321,
           21582779-21582979
          Length = 421

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 174 FLKQRTNPWKNASEAGYVFDTALQRFLSMKV 266
           F+ QR   W N S     +DT L RF+++K+
Sbjct: 44  FVAQRKLGWGNFSTVWLAYDTLLNRFVALKI 74


>09_02_0580 +
           10884012-10884081,10884173-10884419,10884472-10884735,
           10885630-10886093,10888326-10888396
          Length = 371

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 165 RREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSL 308
           RR    Q    WKN S A  + DT+L   + + V Q     V+  TSL
Sbjct: 202 RRWLRMQLDRTWKNLSTASTIKDTSLDYAVPLPVMQTAAEAVSNETSL 249


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 111 SDAELNLIKTQASRRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQ 272
           S + L   +T+  RRA  +RE+ KQR    KN         T LQ+   ++  Q
Sbjct: 148 SKSALPRAETEEERRARKKREYEKQRAEDRKNQQMMRQSQATVLQKTQQVRAAQ 201


>04_04_1197 +
           31672019-31672325,31672431-31672740,31673334-31678335,
           31678677-31678715
          Length = 1885

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -1

Query: 317 KSKQTSSL--VYG--KIFKLCYFHGQKPLQCCVENITSLRSVFP 198
           KS++  SL   YG  +  KLCY H   PLQ CV    S  S+FP
Sbjct: 548 KSEEWKSLQQAYGIMQALKLCYDHLSNPLQQCV----SYCSLFP 587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,955,524
Number of Sequences: 37544
Number of extensions: 226502
Number of successful extensions: 524
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)