Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P15_F_I13
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   2.9  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    26   5.1  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   8.8  

>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 441 SIFRNNLEIYYNSNNYFYFKAFIELACKKILSPSKIE**SHFVNKNFIYTE 593
           S+F+NNL +     + F F    E+ C+ +L   +++  +   N NFI+ +
Sbjct: 19  SLFKNNLRVSRLPESRFVFSPKEEINCQSLLQGPELK--TALDNLNFIHKQ 67


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 253 HFSLGPVSRIT*SQNYSRMLKVLQSKFATSR 161
           HFS+ P+ + +  Q Y     +L +KF + R
Sbjct: 64  HFSITPIEQTSCKQMYEPSTNILHTKFYSER 94


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 316 YVNATKSILDPREYEYLKFFTHFSLGPVSRIT 221
           +V+ATK     R+Y+ LK  +   LG +S IT
Sbjct: 718 HVSATKKKEFTRQYQLLKNISSNKLGSISGIT 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,451
Number of Sequences: 5004
Number of extensions: 38227
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)